Oryzias melastigma (Indian medaka): 112163482
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Entry
112163482 CDS
T07439
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112163482 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112163482 (mtrex)
03041 Spliceosome [BR:
oml03041
]
112163482 (mtrex)
03009 Ribosome biogenesis [BR:
oml03009
]
112163482 (mtrex)
03016 Transfer RNA biogenesis [BR:
oml03016
]
112163482 (mtrex)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112163482 (mtrex)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112163482 (mtrex)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112163482 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
112163482 (mtrex)
Ribosome biogenesis [BR:
oml03009
]
Eukaryotic type
Pre-60S particles
Helicases
112163482 (mtrex)
Transfer RNA biogenesis [BR:
oml03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112163482 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112163482
NCBI-ProteinID:
XP_024155669
Ensembl:
ENSOMEG00000008825
UniProt:
A0A3B3BR90
LinkDB
All DBs
Position
LG12:8784460..8809139
Genome browser
AA seq
1039 aa
AA seq
DB search
MADLFGEGLFNVFDEEQQSSSSKKTPASAATETGKAAGKYGADKDAGSSTRTKREADDDP
GEEVVFEKKPRSEAASANDLNLSEFMPQVKVEQVDTVEGCSHEVALPVDFEFKPLKQRVG
KAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLITGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGGGGGGGGKWDPR
GRKGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKRLVEE
VFNNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFAT
ETFAMGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEK
MSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVV
EKIKKLEEQYHTIEIPNEESVVTYFKIRQQLAKLSKEIQEFIHKPKYCLPFLQPGRLVKV
KKDDADFGWGVVVNFCKKTNVKATTDSDPLYVVEVLLHCSKESMKNAATEAAKPAPPGET
GEMQVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDM
GIKDPALKKVIQKVEAFEHRMYTHPLHSDPNLESVYSLCEKKALIATEVRTAKRELKKAR
TVLQMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMMFNGLFNDLSVE
QATALLSCFVFQENASEIPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEDSYLGQFK
SHLMDVVFAWANGASFSQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKF
AEGITKIKRDIIFAASLYL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctattcggagaaggattgttcaacgtttttgatgaagaacaacaaagttct
tccagcaaaaagactcctgcgagtgcggctacggagacagggaaagcagcaggtaaatat
ggcgctgacaaagatgcaggctcctccacccggacaaagagggaggcagatgatgaccca
ggggaggaggtggtttttgagaagaaacctcgaagtgaggcggcctcagccaatgatcta
aatctttcagagtttatgcctcaagtaaaagtggagcaggtggacacagtggaaggatgt
tcacatgaggttgctttgcctgtggactttgagtttaaacctttaaagcaaagagtgggg
aaagcagctaaggaatacccttttgtacttgatcctttccaacgtgaggccatcctatgt
attgacaacaaccagtctgtgcttgtgtctgctcacacctctgctggaaagactgtctgt
gctgagtatgccattgcactggctctccgagaaaagcagagagtaatcttcacaagccca
atcaaggcactctccaatcagaagtacagagagatgtacgaggagtttcaggatgtgggg
ctgatcactggagacgtcaccatcaaccccactgcctcctgcctggtcatgaccacagag
atcctgaggagcatgctttaccggggctcggagatcatgagggaagtagcgtgggtcatc
tttgatgaaatccactacatgagggatgcagagcgtggtgtggtttgggaggagaccatc
attcttcttcccgacaatgtacactatgtgtttctgtctgctaccattcccaacgccaag
cagtttgcagagtggatctgccacctgcacaagcagccatgccatgtggtttacacagat
taccgccccactccgctgcagcactacatttttccagcaggtggcgacggactccactta
gttgttgatgagaatggggactttagagaagacaatttcaacacagccatgcaggtgctg
agagatgctggggattctggaggtggcggtggcggcggcggcggcaagtgggacccaaga
ggacgaaaaggaggcaccaaaggtccatctagtgtttttaagatcgtgaagatgatcatg
gagaggaacttccagcctgtaatcatcttcagcttcagcaagaaggaatgtgaggcctac
gctctgcaagtggccaaacttgacttcaacacggatgatgagaaacgtctggtggaagaa
gtgttcaacaatgcggtggactgcctctcggatgaggacaagaaactgcctcaggtcgaa
catgtgttgccgctgttgaaaagagggataggtatccatcatggaggtctgctgcccatt
ctgaaagaaacaatagaaattcttttctctgaaggtttgctcaaggcgctgtttgccacc
gagacttttgccatgggcatcaacatgccagctcgcactgtgctcttcaccagcgctcgc
aaatttgacggcaagagtcaccgctttatcacgtcaggcgagtacatccagatgtcggga
cgtgctggaagaagagggatggacgacagggggattgttattttcatggtggatgagaag
atgagtcccgctgtggggaagcagctcctgaagggctcagcggacccgctgaacagcgct
ttccatctgacctacaacatggtgctgaacctgctgcgagtggaagagatcaacccagag
tacatgctggagaagtccttctaccagttccagcattacagggccctgcccggtgtggtg
gagaaaattaagaagttggaggagcagtaccacaccattgagatcccgaacgaagagagc
gtggtcacctacttcaagatcaggcagcagttggccaaactgagcaaagagattcaggag
ttcatccacaaacccaaatactgcctgcccttcttgcagcccggacggctcgtgaaggtt
aaaaaggacgatgctgacttcggttggggagttgtcgtaaacttctgcaagaagacgaac
gtaaaggccaccacagactcggatccgctgtatgtggtggaggtattgctccattgtagt
aaagaaagtatgaaaaacgctgcgactgaagctgctaaacctgctccaccaggagagact
ggagagatgcaggtggttccagtgatgcttcacctcctcacatccatcagctcagttcgt
ctgtacattcccaaagatctgaggcccttcgacaacagacagctgatgctcaagtccata
caggaggtgcagaaacgttttccagatggtgttcccctattagaccccatcgacgacatg
ggcatcaaagaccccgcgctgaagaaagtcattcagaaggtggaggcctttgaacaccgc
atgtacacccacccgctgcacagtgaccccaacctggagtcggtttactctctctgcgag
aagaaagctctgatcgccacagaagtccgaacggccaaacgagagctgaagaaggctcgc
accgtgctgcagatggacgagctgaaatgccggaagagggttctgcggagactcggcttc
gccagtccctccgacgtcattgagatgaagggacgggtcgcctgtgaaatcagcagtggt
gatgagctcctgctgacagagatgatgtttaacggactcttcaacgatctgtcggtggaa
caggccacagctctgctgtcctgcttcgtcttccaggagaatgccagcgagatacccaaa
ctgacggaacagctggccgcgccgctcagacagatgcaggagtgtgcgaagcgcatcgcc
aaagtgtcggcagacgccaagctggaagtggacgaggattcgtatctgggacagttcaag
tcccacctgatggacgtggtgtttgcctgggccaacggggcctccttctctcagatctgc
aaaatgaccgacgtctttgaaggaagcatcatccgctgcatgcgccgcttagaggaagtg
ctgcgacagatgtgctcggcagccaaagccatcggcaacactgaactggagaacaagttt
gcagaaggaataacgaagataaagagagacattatctttgctgctagtctctatttatag
DBGET
integrated database retrieval system
