Oncorhynchus masou masou (cherry salmon): 135504361
Help
Entry
135504361 CDS
T10723
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omm04515
]
135504361 (clstn1)
Cell adhesion molecules [BR:
omm04515
]
Cadherins
Cadherin related
135504361 (clstn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Ig_CLSTN
Cadherin
Laminin_G_3
CDC45
FAM176
Laminin_G_2
Toxin_R_bind_N
Cadherin_pro
V_ATPase_I
Cadherin_C_2
EphA2_TM
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
135504361
NCBI-ProteinID:
XP_064778949
LinkDB
All DBs
Position
18:28774167..28837460
Genome browser
AA seq
981 aa
AA seq
DB search
MQIRRYKHFASVVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTFTKEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICSYEIVTPDVPFTVDKDGFIKNTEKLNYSKERMYKLTVTAYDCG
KNRASEDVLVKINIKPTCKPGWQGFNKRIEYEPGTGSLALFPSMHLETCEEPITSIQANI
ELETNHIGKGCDRDTYSEKSLHKLCGASAGTVELLPAPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPEGVVSTSLKEPFTVSVWMRHGPGAREKETILCNSDKTEMNRHHYSLYVH
NCHLILLLRQDPAETENYKPAEFHWKLDQVCDKEWHHYVLNVEFPSVALFVDGATFEPFL
VTEDYPLHSSKIDMQLTIGACWQDNPGHDKDNETVSEPSTGGNARMSQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVAFNPNQSLLTVEGDDIEAFDKVMQHI
SYLNSRQFPTPGIRHLRVSTTVKCFNEETCILIPEAAGYVMVLQPEEPKISLSGIDHFAR
GAAEFESPEGVTLFPELRIVSTITREVEAETEPEATEGAEDDPTVQETVVSEEIMHNLDT
CEVTALGDELDGEHETLEVDQAQVQQRGLEMTSSNLGLVLTGVNTMANYEQVLHLIRYKN
WHTEALFDRKFKLFCSELNGRYISNDFKVEVSVIHTANPMDHANNAMVQPNFINPVHHAS
VDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRSAHQRTMRDTEGGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEEGEEEDDITSAESESSEDEEAGEP
EDQQGASRQQQLEWDDSTLTY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcagaaggtataaacattttgcatccgttgtcggactggtcctcggactatta
tgtgcggtggaggcagctaaagttaataagcacaagccatggatcgagaccacgtatcat
ggcatcgtaacagaaaatgacgacaaagtacttctggaccctccacttatcgccctggac
aaagacgccccactgcgctacgcagaaagttttgaggtgaccttcaccaaagaaggtgag
atttgtggcttcaggatccatgggcagaatgttccctttgaggcagtggtcctggacaag
tccacgggtgagggagtcattcgagctaaggacaagctggactgtgaactccagaaggag
cacaccttcaccatccaggcctatgactgtggagagggccccgacggagccaacatgaag
aaatctcacaaggccactgtccacatccaagtgaacgacatcaacgagtattccccagtg
ttcaaggagaagtcctacaaagccacggtcatcgagggtaagaagtatgacagcatcctg
aaggtggaggcagtggatgccgactgctcattccagtttagccagatctgcagctacgag
atcgtcaccccagatgtacccttcactgttgacaaggacggcttcatcaagaacacagag
aagctgaactacagcaaagagcgcatgtacaaactgacggtgactgcctacgactgtggg
aagaaccgcgcctcagaagatgtgctggtcaagatcaacattaagcccacctgcaagccc
ggctggcaaggtttcaacaagaggattgagtatgagcctggcacaggcagtctggccctt
ttccccagcatgcacttggagacctgcgaggagccaatcacctccatccaggccaacatc
gagctggagaccaatcacatcggaaagggctgcgaccgagacacctactctgagaagtcc
ctgcacaagctatgcggcgccagcgctggcacggtggaattactgcctgcaccaagcagc
tctgccaactggacggtgggtctgcccacagacaatgggcatgacagcgaccaggtgttt
gagttcaatggcacgcaggccatcaaggtgcccgagggcgtggtgagcaccagcctgaag
gagcccttcaccgtctctgtgtggatgaggcacggccccggggccagggagaaggagacc
atcctctgtaactctgacaagaccgagatgaacagacaccactactccctctacgtccac
aactgtcacctcatcctgctgctgcgtcaggaccccgcagagacggagaactacaaacca
gcggagttccactggaaactggaccaggtgtgtgacaaagagtggcaccactacgtgctg
aatgtggagttcccctccgtggctctctttgtagacggggccaccttcgagcccttcctg
gtcactgaagactaccccctgcactcctccaagatcgacatgcagctcactatcggggcc
tgctggcaagacaacccaggacatgacaaagacaatgagacagtctctgagccttccaca
ggcggcaatgctcgcatgtcccagtttttccgggggaatctggccggcctgatgatccga
tcgggaaagctggagaacaagaaggtgatcgactgcctgtatacctgcaaggagggcctg
gatgtgcagctgcctgaggaggtggcctcagccgtcaaggtggcattcaaccccaaccag
tcgttgctgaccgtggaaggcgatgacattgaggctttcgacaaggttatgcagcatatc
tcctacctgaactcacgccagttccccacccccggcattcgtcacctccgcgtctccacc
accgtcaagtgcttcaatgaggagacgtgcatcttgataccggaagcggcgggatacgtg
atggtgctgcagcccgaggagcccaagatcagcctgagtggcatcgaccactttgcccgc
ggcgctgcagagtttgagagccctgagggcgtgactctgttcccagagctgcgcatcgtc
agcaccatcacccgtgaggttgaggctgaaaccgagccagaggccacagagggggcagag
gatgaccccacagttcaagagacggtagtgtcggaggagatcatgcacaacctggacaca
tgtgaggtgacggcgctgggcgatgagcttgatggagagcatgagaccttggaggtggac
caggcccaggtccagcagcgcggcctggagatgacctcctccaacctgggtctcgtcctg
acaggcgtcaacaccatggccaactatgagcaggtcctgcacctaattcgctacaagaac
tggcacacagaggctctctttgacaggaagttcaagctgttctgctccgaactcaacggc
cgctacatcagcaacgacttcaaggtcgaggtcagtgtgatccacacagccaaccccatg
gaccatgctaataatgccatggtgcagcccaatttcatcaacccagtgcaccacgcctct
gtggacctgtccggacacaacctggtcaacgctcaccaggcttcagtggtccccagtgcc
gccaccatcgtcattgtggtgtgtgtcagcttcctggtgttcatgatcatcctgggcgtg
ttccggatccggtcagcccaccagcgcaccatgagggacacagagggcggcaaggagaat
gagatggactgggatgactcggccctcaccatcacagtcaaccccatggagacttatgag
gaccagcacagcagtgaggaggaggaagaagaagaggaggagagcgaggaaggtgaggag
gaagatgacatcacaagtgctgagtcggagagcagcgaggatgaggaggccggagagcca
gaggaccagcagggtgccagcagacagcagcagctggagtgggacgactccacactcacc
tactaa
DBGET
integrated database retrieval system
