Oncorhynchus masou masou (cherry salmon): 135504419
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Entry
135504419 CDS
T10723
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
YjeF_N
Motif
Other DBs
NCBI-GeneID:
135504419
NCBI-ProteinID:
XP_064779083
LinkDB
All DBs
Position
18:32247466..32279337
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AA seq
1583 aa
AA seq
DB search
MPLHCQRPGCPALMGPFLVTLLLLMNSGVHSQGRLKLTVLSQDRLQMKWKEAEGPVQGYK
VRVKPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTLEKLIAKRRFTIEGLR
EEELVRSGSREQRRKALPGGSGSGELDDPIEALVAVPTVVYHEPTTTTTTTTEPPTTPET
TTQNNELVTEKAPKEKRKRKKEKDRSKVDNKEEQGTTQGKPVEDENSDREKVRKTIPTQP
VTVVSTRKAFECDTTAAADVVMLVDGSWSIGRTNFRRVRDFLEGLVTPFHIGPDRVQIAL
SQYSGDPRTEWQLNNFTTKEQLLEAVRNFRYKGGNTFTGHALLHVLEENLRHESGARPDT
PRILILLTDGKSQDDAIAAANRLKNTGVEIIAVGVKNADESELRQVASEPLEINVYNVND
FPLLSKLVDRLVHILCGKIEERSIAKRNERPTEDPVLYYPSPTDLEFSELGPREVQLSWT
GPTRPVLQYRVVFHSAEGQSPQEVVVNGTVSSVLLGGLSSQTHYHISIFPVYDDNVGLAL
RGTITTLPLAMPEGLEVTPSSPSSLRVRWGATAGATQYMVLYSSLSHGEPDDAKEVKFGA
DQTDVILGGLIPVTDYSVTLYALYDEDPSDPVTAIATTYPLPSPVSMQFPKVSHSMVRVS
WVPGVVDVPGHRITCSTNHGSDVKQVEVTGVNSVLLQNLSSLSRYLVSVQSQYEQGLSSP
LTANVTTLRVPAPSDLRVTNFSGSDITVRWESAADDVVSYLIKWISLSGGDLRQLRVDGD
SEGAILEGVQDDKEYQISLSALYADGAQSEAVAIRYSTLSGGGPSSVSVSEETAVSLLVS
WVPPNAHVLQYHVSYTALMGGETQESTVLVSGSERQTLLQTLLPDTRYSILVTAEYRNRE
GGSASAQGKTISLRVSSVSVMRSDHSSICVSWRPVSAVSGYRIAIQSFKDKQTKQEIVDA
SSSSYCFTELEPETVYRISVHSRLDTVEGAAVSILHPTASSPARIPIHPRLHPIRNEVCP
EVTIRNSIVKGFDMMEAFGLTQRTYSSVEGVAAEPFVFNTLHTYTVYRDIQLTQSTGFIH
PAGFSPDHTISIAFRLLQDTPREPFALWQLTDNDFQPKMGVVLDPVSKLLLYFSLDYRGE
VQELTFDQPQVHRLFYGSFHKIHLSISQVSVSLSVDCQHVGERPARPLGTLPTDGFETLG
KLMKTRGPHSGSAPFQLQSFEIVCNTTWALEDTCCDLPGLRDEESCPAPAYACTCTSDIP
GAPGVMGPPGKPGPRGEKGEKGEEGQKGEIGPSGKMGSEGVLGPLGNRGPRGLTVQGKVG
PPGARGVKGEVGKPGGQGLPGPPGPKGNEGAPGPKGIRGVEGNMGGPGITGPRGFQGMPG
HPGVVGERGPLGGVGPTGLPGNKGERGEKGEPQSMAMIFQLVTQACEQLVHNEVLKLDLF
LNEMSRKPVPIEEPVGPPGEPGIPGGKGPPGQRGNQGRLGTSGEPGKSGYPGEQGRRGAP
GEKGSLGPNVQGPQGIKGFAGLPGEAKLGSPGPRGEDGQTGPPGIAGAVGQAGEIGPPGV
CDSSGCHRGAQAQTEDPYFGYQP
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgcctcttcactgccaacgacctggctgcccagcgctgatggggcctttcctggtcact
ctcctgttgctaatgaactctggagtccatagccaagggcgtctgaagctgacagtgctg
tctcaggatcggctgcagatgaagtggaaggaggctgaagggccggtccagggatacaag
gtccgcgtgaagcccatctcagaggtaccccagccggagctgatgctgacgaccacgcgt
ggccgggccacagtggcaggtctggactccagccaggaatacgccctccaggtcctagtg
ctcaacggcacactggagaaactcatcgccaagagacgcttcaccattgagggcttgcga
gaggaggagttggtccgtagtggcagccgtgaacagcggcggaaggccctaccagggggg
tcagggtcaggtgaactggatgaccccatagaggccctggtagctgtacccactgtggtc
taccatgagccgacaaccaccaccaccaccactacagaacctccaactactccagaaaca
actacccagaataatgagttggtgacagagaaggctcccaaagagaagaggaagaggaag
aaagagaaggatcgctccaaggtggacaataaggaggagcaggggacaactcaggggaaa
ccagtagaggatgagaactccgacagggagaaagtcaggaagacgatccccacccagcct
gtcacagtggtgtccactcggaaggcctttgagtgtgacaccacagcagccgctgacgtg
gtcatgttggtggacggctcctggagcattggacgcaccaacttcagacgtgtcagggac
ttcctggagggtctagtcacgcctttccatatcggcccagacagggtgcagatagccctt
tctcagtacagtggagaccctcgcactgagtggcagctcaacaacttcactaccaaagag
caactgctggaggccgtcaggaacttcagatacaagggcggcaacaccttcacgggccat
gctctgctgcatgtcctggaggagaacctgagacacgagtcaggggcgaggccggacacc
cctcgtatcctgatcctcctgacggatgggaagtcgcaggatgacgccatcgctgcagcc
aaccggctgaagaacaccggcgtggagatcattgccgtaggtgtaaagaacgcagacgaa
tcagagctgaggcaggtggcgtctgagcctctggagatcaacgtctacaatgtgaatgac
ttccctctgctcagcaaactggtggaccgactggtgcacatcctctgtgggaagatagag
gagcgcagcattgctaagagaaacgaaaggccgacagaggaccctgtgctctactaccca
agccccacagacctggagttctctgagctgggccccagggaggtgcagctgagctggact
ggacctacccgacctgtcctgcagtacagagtggtgttccacagcgccgagggacagagc
ccacaggaggtggttgtgaatggaaccgtctccagtgttctgctgggtggactctcctcc
cagacccactaccacatatcaatctttcctgtctacgatgacaacgttggtctggccctc
agagggaccatcaccacattgcccctggccatgccggagggtctggaggtgaccccctcg
tcccccagcagtctgagggtgcgttggggtgccaccgcgggggccactcagtatatggtt
ctctactcctccctcagccacggagagcccgacgatgccaaggaggtgaagtttggggca
gaccagactgatgtgattctgggtggtctgataccagtgacagactactctgtcaccctg
tatgccctgtatgacgaggaccccagtgaccctgtcaccgccatcgccaccacatacccg
ttgccctcccccgtcagtatgcagtttcccaaggtgagccacagcatggtcagggtcagc
tgggttcctggagtggttgatgttcccggtcacagaatcacctgcagcaccaaccatggc
agtgacgtcaaacaggtggaggtgacaggtgtgaactcagttctgctacagaacctgtcc
tctctgtctagatacttggtgtcggtgcagtcacagtatgagcagggcctgtcctcaccg
ctcacagccaacgtcaccacattgagggtaccagccccctctgatctcagagtcacaaac
ttctcaggaagtgacatcacagttcgatgggagtcagccgccgatgacgttgtctcctac
ctgattaaatggatctcactcagtggaggggacctcagacagttgagggtggatggggac
agcgagggggccatattggagggggtgcaggacgataaggagtatcagatctcactgtct
gccctctacgccgatggagcccagagtgaggcagtggctatacgatacagcaccttgtca
ggtggcggcccttccagtgtgtccgtctcagaggagactgcagtcagtctcctggtgagc
tgggttcctcccaacgcccatgtactgcaataccatgtctcctacaccgccctgatggga
ggagagacacaggagagcactgtgttggtttcaggcagcgagagacaaacattgctgcag
accctgctacctgacacacgctacagcatcctggtcactgcggagtaccgcaaccgagag
ggagggagcgcctccgcacagggcaagaccatcagtctgcgagtgagcagtgtcagtgtg
atgaggtctgatcactccagtatctgcgtgtcttggaggcctgtttcagcagtcagcggt
taccgcattgccatccagtctttcaaagacaagcagacaaagcaggagatagtggatgca
tcaagcagcagctactgtttcactgagctggagccagagactgtgtaccgcatcagtgtg
cactcccgcctcgacactgtagagggagctgcagtctccattctccaccccacagcatcg
tccccagccagaatccccattcatcctagactgcacccaattcgcaatgaagtatgccct
gaggtgaccatcagaaacagcattgtaaaagggtttgatatgatggaggcttttggtctg
acccagaggacttactcatctgtggagggggtggcggctgagccttttgtcttcaatact
ctacacacctatactgtgtacagagacatccaactgactcagagcacaggattcatccac
ccagcaggcttttctccagatcacaccatcagtatagctttccgtctgctacaggacacc
cccagggagccctttgccctctggcaactcaccgacaacgacttccagcccaagatgggc
gtggtgctggaccctgtgagcaaactgttgctgtacttcagtctggactacagaggggag
gttcaggagctcaccttcgaccagccacaggtccacaggctgttctacggaagcttccac
aagatccacctgtctatcagccaggtgagcgtatccctgtctgtggactgccagcatgtg
ggtgagaggcccgcacggccactggggactctgcccactgacggttttgagacactgggc
aaactgatgaagacccgtggaccacacagcggctctgccccgttccagctacagtccttt
gagattgtgtgcaacaccacctgggcattagaggacacctgctgtgatttgccaggcctg
agggatgaggagagctgccccgcccctgcctatgcctgcacctgtacctccgacatacct
ggagctcctggtgtcatgggtcctcctggcaaaccgggtcctcgtggagaaaagggtgaa
aagggagaggagggccaaaagggtgagataggcccttcagggaaaatggggtcagaaggc
gttcttgggcccctgggaaatcgtggccctcggggattgacagttcagggcaaagtggga
cctccaggggctcggggtgtgaagggggaggtgggaaagccaggtgggcagggtttacca
ggtcctcctggacccaaagggaacgaaggagccccaggccccaagggcatcagaggagtt
gaggggaacatgggcggaccagggattactggacctaggggtttccagggtatgccagga
cacccaggggttgttggagagaggggacctttagggggggtggggccgaccggtcttcct
gggaataaaggtgaaaggggagagaagggagagcctcagtccatggcaatgatcttccag
ctcgtcacacaggcctgtgagcaactggtgcacaacgaggtgctgaagctggatttgttc
ctgaatgagatgagccgcaagcctgtgcccattgaggagccagtgggtcccccaggagag
cctggtataccagggggaaagggcccaccaggacagagggggaaccagggaagactggga
actagtggggaaccagggaagtctggatacccaggagagcagggacgtagaggtgccccc
ggggaaaaaggcagcttagggcccaatgtccagggaccacagggaatcaaaggatttgca
ggtctcccaggagaggccaagctgggcagtcctggccctagaggagaggatggccagacg
ggacctccgggcatcgcaggagcagtcgggcaggcaggagaaatcggtccccctggtgtt
tgtgatagcagtggctgtcatagaggtgctcaggcacaaacagaggacccatattttgga
taccagccttga
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