KEGG   Oncorhynchus masou masou (cherry salmon): 135504600
Entry
135504600         CDS       T10723                                 
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:omm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    135504600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:omm03019]
    135504600
   03036 Chromosome and associated proteins [BR:omm03036]
    135504600
Messenger RNA biogenesis [BR:omm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     135504600
Chromosome and associated proteins [BR:omm03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    135504600
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WDR55 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_NOL10_N Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C WD40_RFWD3 PAC11 Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_EIPR1 eIF2A ASA1 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_Nup120_160 WD40_MABP1-WDR62_2nd ExoI_SH3 Beta-prop_WDR41 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 135504600
NCBI-ProteinID: XP_064779391
LinkDB
Position
18:complement(40739161..40743500)
AA seq 372 aa
MSLFGTSTGFGAGGFGAATTDTHNPMKDVEVTSPPDDSISCLAFSPPAMPGNFLIGGSWA
NDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSEDGSKVFTASCDKTAKMWDLNSNQAIQI
AQHDAPIRTVHWIKAPNYNCIMTGSWDKTLKFWDTRSPNPMMSLQLPERCYCADVVYPMA
VVASAERGLIVYQLENQPSEFRRIDSPLKHQVTGFTYQHRCIAIFKDKQNKPAGFALGSI
EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGR
FSFWDKDARTKLKTSEQLDQPITACSFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLR
NATEELKPRNKK
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgagcttgtttgggaccagcactgggtttggcgcagggggattcggagcggcaaccacg
gacacacacaacccaatgaaggatgtggaagtaacctcacccccagatgacagcatcagt
tgcttggcgtttagtccccctgccatgccagggaacttcttgatagggggatcctgggcc
aatgatgtgaggtgttgggaggtacaggacaatgggcagacagtccccaaagcccagcaa
atgcacacaggtccagtccttgatgtctgctggagcgaagatggaagcaaggttttcact
gcatcttgtgataagactgccaaaatgtgggatctcaacagcaaccaggcaatacagatc
gcacagcatgatgctcctatcagaacagtccactggatcaaagcccccaactacaactgc
atcatgacaggcagctgggacaaaaccctgaagttctgggacacccgttcgcccaaccca
atgatgtccctgcagctgccggagaggtgctactgtgcagacgtggtgtatcccatggca
gtggtagcatcagcagagcggggtttgattgtatatcagcttgagaaccagccgtccgag
ttcaggaggatagactcaccactcaaacaccaggtgactggtttcacataccagcaccgc
tgcatagccatctttaaggacaaacagaacaagcctgctggatttgctcttgggagcatt
gaagggcgggtcgccattcactacatcaaccctcctaacccagccaaggataacttcacc
ttcaagtgccacaggtcgaatggaaccaacacaaccacaccacaagacatctatgctgtg
aatgccatctccttccaccctgtccacggtacactggcgactgttgggtctgacggtcgc
tttagcttctgggataaagacgctcgcaccaagctgaagacctcggagcagctggaccag
ccaatcacagcttgctcgttcaacaacaacggcaacatctttgcctacgcctctagctat
gactggtcaaaggggcatgagtactacaaccctcagaaaaagaactacatctttctgcgt
aatgctactgaggagctgaaacctcggaataagaaatga

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