KEGG   Oncorhynchus masou masou (cherry salmon): 135504615
Entry
135504615         CDS       T10723                                 
Name
(RefSeq) collagen alpha-1(II) chain-like
  KO
K19719  collagen type II alpha
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Pathway
omm04510  Focal adhesion
omm04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:omm00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    135504615
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    135504615
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:omm00536]
    135504615
Glycosaminoglycan binding proteins [BR:omm00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   135504615
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 135504615
NCBI-ProteinID: XP_064779411
LinkDB
Position
18:complement(41102270..41131258)
AA seq 1420 aa
MFSFVDSRTVLLLVASQVVLISIVRCQEEDDQAVIGAKGQKGEPGEIADVVGPNGPAGPM
GPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGTPGPPGPNGPPGLGGNFAAQMAG
GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGALGPQGPP
GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGSKGEGGAA
GAKGEGGAPGENGAPGPMGPRGLPGERGRPGASGSAGARGNDGLPGPAGPPGPVGPAGAP
GFPGSPGSKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS
GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPQGGPGPA
GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT
GDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP
GPKGANGVPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQGAAGPSGFQ
GLPGPAGPPGEGGKPGDAGVPGEAGAAGVTGPRGERGFPGERGGAGSQGLQGPRGLPGTP
GTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPEGAPGKDGSR
GLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP
GAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGGRGAQGGAGATGFPGAAGRV
GSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEKGDAGEDGPP
GPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGAGGDRGPPGPVGPP
GLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ
GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP
GSAGDQGAAGPAGPSGAKGPPGPAGPAGKDGSNGTPGPLGPSGPRGRSGEAGPAGPPGNP
GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNYQ
IENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY
PSIANVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ
SLTYHCKNSVAYMDASTGNLKKALLLQGSNEVEIRAEGNSRFTYSVAEDGCKKHTGQWGK
TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq 4263 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
atatccattgtcagatgccaggaagaggacgaccaggcggtgattggtgctaagggccag
aaaggggaaccaggcgagattgcagatgttgtaggaccgaatggaccagcaggccctatg
ggcccctcgggcgagcagggaccacgtggagaagctggcgctaagggcgataagggaaat
gttggccccagaggcagagatggcgagcctggaacccccgggaaccccggaacccctggc
cctcccggacccaacggacccccaggtcttggcgggaacttcgcggctcagatggctggt
ggattcgacgagaaagccggaggcgcacagatgggagtgatgcaaggacctatgggccct
atgggtccccgtggtccacctggcccttctggagcccctggcccacaaggtttccaaggt
aaccccggagagactggagagccaggccctgctggtgcactgggaccccaaggaccccct
ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgaa
cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcccgga
atcaaaggacacagaggtcatcctggtctcgatggatctaagggagagggtggtgctgct
ggagccaagggcgagggtggcgctcccggagagaacggcgcccctggaccaatgggacca
cgtggtctgcctggcgagagaggccgtcccggagcttctggctctgctggtgcccgtggt
aacgatggcttgcctggccctgctggtcctcctgggcctgttggacctgctggagcacct
ggtttccctggatcccctggctccaagggagaagctggcccaactggtgcccgtggaact
gagggcgcacagggaccccgcggagaggctggcacacccggatctcccggtcccgctggc
gcctctggcaaccctggtactgatggtatcccaggagctaaaggatctgctggtgcttct
ggtattgctggtgcacctggtttcccaggaccccgtggcccccccggacctcagggagca
acaggacctcttgggcccaagggccagtcgggagaccccggtattcctggtttcaaagga
gaggctggacccaagggagagcttggccctattggtccccaaggcggccctggccccgct
ggcgaggagggcaaacgaggagcaagaggagagccgggtgctgctggaccacttggacct
cctggcgagagaggagctcccggtaaccgtggtttcccgggtcaggacggtcttgctggt
tctaagggagcccctggtgaccgtggtgttcccggcgtgggtgggcctaagggaggcact
ggtgaccccggccgcgcaggagagcctggtcttcccggagccagaggtctcactggtcgc
cccggagatgctggtcctcaaggcaaagttggccctggtggtgctgctggtgaggacggt
cgccccggcccacctggtcctcagggagcacgtggccagcctggtgtgatgggattcccc
ggaccaaagggagccaatggtgtgcctggcaaggcaggagagaagggtctcgtgggtcgt
caaggtctgataggtctgtctggtaaagatggtgagactggcgctgctggacctaacggc
cctgctggacctgctggagagagaggagagcagggagctgctgggccatctggcttccag
ggtctgcctggacctgctggccccccgggagagggaggcaagcctggtgatgcgggtgtc
cctggagaggctggtgctgcaggcgttacgggacccagaggcgagcgtggtttccctggt
gagaggggcggtgcaggatctcagggtctgcagggacctcgtggacttcctggaactccc
ggaaccgatggacccaagggagccattgggccaactggtggtgctggatctcagggaccc
cccggactgcagggtatgccaggagagagaggagctggtggtatccttggagccaaaggt
gacagaggtgacaacggcgagaaaggacctgagggcgctcctggaaaggatggttctaga
ggcttgtctggtcccattggtcctcctggcccagctggtcccaacggcgtgaagggtgag
ggtggaccttctggcccaactggtgcggctggtgcccgtggcgctcctggtgaccgtggt
gagggtggtcctcctgggcctgctggcttcgctgggcctcctggtgcagatggtcagcct
ggagccaagggagagtttggagaggctggacaaaagggagatggtggtgcccctggacct
cagggaccctctggggcccctggacctgtgggtcccactggtgtttctggatctaaagga
ggccgcggtgcccagggtggcgctggtgctactggcttccctggtgctgctggaagagtt
ggatctcccggtcccaacggtaaccctggtgctgctggccctgctggccctgctggtaaa
gatggccctaagggagtccgcggtgacgctggcaccccaggaagacagggagatgccggg
ctgcgtggagttgctggagcccctggcgagaagggagatgctggagaagacggaccccct
ggccctgatggtccttcaggtccccatggtctggctgggtctcgtggtattgttggtctg
cctgggcagcgtggagagaggggcttccctggtcttcctggaccgtctggagagcccggt
aagcagggagcttctggtgctggtggtgaccgtggaccgcctggccctgtgggaccccct
ggactgtctggacctgcaggagagcccggaagagagggcaacgctggatctgatggaccc
cctggtagagatggatccactggagtcaagggtgagcgtggtaacactggtcctgctggg
gctcctggtgccccgggcgctcccggtgcccccggccctgtcggccccctgggcaagcag
ggagacagaggagagggaggtgctcaaggacctgccggacctgctggaccagctggcgct
agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga
gagaggggacagaagggacaccgtggcttcactggtctgcagggtcttcccggacctcct
ggctccgctggagaccagggagctgctggacctgccggacctagtggcgctaaaggaccc
cctggcccagccggtcccgctggtaaggatggatctaacggtacccctggacccctcgga
ccctctgggcctcgtggtcgttctggagaggctggtcctgctggtcctcctggtaatccc
ggaccccctggtcctcctggtcctcccggccctggcatcgacatgtctgccttcgctggt
ctgtctcagccagagaagtctccggatcccctgaggtacatgagggcagacgaggcgtcc
agctccctgaggcagcacgacgtggaggtggactccacactcaagtcgctcaactaccag
atcgagaacctgcgcagccccgacggtagccagaagaaccccgcccgcacctgcagagac
atcaaactgtcccaccccgagtggaagagtggtgactactgggtggacccgaacattggc
agcacagctgacgccatcaaggtcttctgcaacatggagactggcgagacctgcgtctac
cccagcatcgccaacgtgccgcacaagaactggtggacaagcaagagcaaggaccgcaaa
cacgtctggttcggagagaccatgaatggaggattccactttagctacgctgaggacggt
accaacgccgccagcatccagctgaccttcctgaggctgctgtccacggaagcgtctcag
agcctcacctaccactgcaagaacagcgtggcctacatggacgcatccacgggcaacctg
aagaaggctctgctgctccagggctccaacgaggtggagatccgagctgagggcaacagc
cgcttcacctacagcgtggcggaggacggctgcaagaaacacacaggccagtggggcaag
actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc
atggacatcggaggagcggaccaggagttcggcgtggatgtgggcgcagtctgcttcttg
taa

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