KEGG T10723: 135504708

Oncorhynchus masou masou (cherry salmon): 135504708

Entry

135504708         CDS       T10723

Name

(RefSeq) methyl-CpG-binding domain protein 4-like

K10801

methyl-CpG-binding domain protein 4 [EC:3.2.2.-]

Organism

omm Oncorhynchus masou masou (cherry salmon)

Pathway

omm03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:omm00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    135504708
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:omm03036]
    135504708
   03400 DNA repair and recombination proteins [BR:omm03400]
    135504708
Chromosome and associated proteins [BR:omm03036]
Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    135504708
DNA repair and recombination proteins [BR:omm03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     135504708

SSDB

Motif

Pfam:

MBD HhH-GPD RNA_pol_Rpc4

Other DBs

NCBI-GeneID:

135504708

NCBI-ProteinID:

XP_064779574

LinkDB

Position

18:46535890..46541564

AA seq 639 aa
MLPSVDNILSLDYHMYQTKTEPTVDTTCASPTDNNTVTTRLKNNDLNTENPITDTHLNPN
SDTDTMAVPGSDMRVTKEADPNAVKRQRTRQEDEESCPPSSMPPGWVRVVRRRKSGKTAG
KMDIYITSPQGQRFRSRASLQAFLLRDTGGDLQIDDFDFTKAKSGSVAVTPLPSQERQRK
VNQKHTRHTSEANIKEDRQNTEEYMEKGRILSLPPNNTKIANSAKSCKQRTRPRDKRTII
THLKPDMPHLARGNHRTAAGRGTETGQPSDTNEDIKETNIQASVRRGEDDETERRLKVVA
VVDDVILEKSPQRRPGLLREKLLRLAPPTDLQDALIGREEQLPVSLLLVPVLRVQSASES
EGEAESEGVGVGVGETEGVENIEAEVHDEELPSPQTTGERCTPLKDSQSKLLGEKRKTSP
YFSRKSMRDGLSPPRRKALRKWTPPRSPFHLVQETLFHDPWKLLVATVFLNKTSGKMAIP
VLWQFFKLYPSAEETRGAEWKPLSVLLRSLGLYELRAKIIIRFSDEYLTKQWRYPIELHG
IGKYGNDSYRIFCVEEWRQVEPQDHMLNKYHAWLWENHESCCLLEFHISGYSSIHTCPPK
SLPYGHSPDIAHHHLTCLSSTASQPVCPQTGPPPSSSGP

NT seq 1920 nt +upstreamnt +downstreamnt
atgctcccgagtgtggacaatatactatcactggattaccatatgtatcagactaaaact
gagcctactgttgatacaacctgtgcttcccctacggacaataacacagtcacaaccagg
ctcaaaaacaatgacctcaacacagagaaccccatcactgacacacatttgaatcctaac
tctgacacagacactatggctgttccaggttcagatatgagagttaccaaagaggctgat
cccaatgcagtcaaaagacagcggaccagacaggaagatgaggagtcgtgcccgccttct
agtatgccgccgggctgggtgagagtagtgagacggaggaaaagtgggaagactgcaggc
aaaatggacatctatataacaagtccccagggacagaggttccggtccagggcgtctctt
caagctttccttctcagagatacaggaggggatctacagatagatgactttgacttcacc
aaagccaagagtggcagtgtagctgtgactccgctgccaagccaggagagacagaggaaa
gttaatcagaaacacacacgtcatacctcagaggccaatatcaaagaagaccggcagaac
acagaggagtatatggaaaagggtagaatattaagcctgcctccaaataacacaaaaata
gccaattccgcaaaatcctgcaagcagaggaccagacccagagacaagagaacgataata
actcatctgaagcctgacatgcctcacctggcaaggggcaatcacagaacggcagctggg
agaggcacagaaacgggccaaccatcagacacaaatgaagacatcaaagagacaaacata
caagcctctgtgagaaggggtgaggatgatgagactgagaggcgtctgaaggttgtggcg
gtagttgacgatgtcatactggagaagagcccccagaggaggccggggctgctgagagaa
aagctgctcaggctggccccgcccactgatctacaagatgctctcattggtcgagaggaa
cagcttcctgtgtcactgttacttgtcccagtccttagggtgcagtctgcttctgagagc
gagggggaggctgagtctgagggtgtgggagtgggagtgggggagactgagggagtggag
aatatagaggcagaggtgcatgacgaagagctgccatctccccagaccactggagagcgc
tgtacaccactgaaagattcccagagcaaactgttaggagagaaacggaagaccagtcct
tatttcagccggaagtcaatgagagatggtctaagcccccccaggaggaaagccttaagg
aagtggacccctcctcgctcccccttccacctggtgcaggagacccttttccacgaccct
tggaaactcctggtagccaccgtgttcctcaacaaaaccagcggtaaaatggccatcccg
gtgttgtggcagttctttaagctttacccatcagcggaggagaccaggggggcagagtgg
aagcccctgtctgtgctgctgagatctttgggcctgtatgaactgcgagccaaaatcatc
atcaggttctctgatgaatacctgaccaagcagtggcgctaccctatagagctgcatggg
attgggaagtatggcaatgactcctacaggatcttctgtgtagaggagtggagacaggtt
gaaccccaggaccacatgctgaacaagtaccatgcttggctgtgggagaaccatgagagc
tgctgtttgcttgaattccacatctctggctattcctcgatccacacctgtccgccaaag
tcgctaccttatggtcactcccctgacattgcccatcatcatctcacctgcctcagcagc
actgccagtcagccagtctgtccccagactggaccccctccatcctcctctggcccatag

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