Oncorhynchus masou masou (cherry salmon): 135505681
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Entry
135505681 CDS
T10723
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135505681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135505681
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135505681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
Motif
Other DBs
NCBI-GeneID:
135505681
NCBI-ProteinID:
XP_064780796
LinkDB
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Position
19:complement(42686753..42769008)
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AA seq
728 aa
AA seq
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MSRHRNVRGYNYDEDLDDDDLYGQSVDDDYCISPATAAQFIYSSRQERPNVEPPLEEEEM
EEEEAIHTSPTLTHNLNPLDQGKLYSCLDLMRAVLGDAVPESVLTQAALRCAFDPQRALD
AVLSVESAGLPPLDARTNNDAPLPQRANKETAVVPRANQEASAAPRPEKAKDREAGQCQL
DSEVLPKVARMTVSGKKQTMGFDVPSTEENGVVPSPSVHRRGSPDDMTMKTSPETPSKRP
ETPSKGFGGAEEPTSVPTPGRTPGKAKQQLNVRAELEKRQGGKSLLNLVVIGHVDAGKST
LMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERNRGVTMDVGMTKFET
ASKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRS
LGVTQLAVAVNKMDQVNWQQERFKEIISKLGHFLKQAGFKDSDVFYVPTSGLSGENLTTK
SSALALTSWYSGPCLLEQIDYFKPPQRSIEKPFRLCVSSKVLSVVFHGSGLCVLTLFSVV
LDQGSGFCVTGKIEAGYIQTGDRVLAMPPNETCTVKGISLHDDPLDWAAAGDHVSLTVTG
MDIIKINVGCVFCDIKEPIRACSRFRARVLLFNIEVPITQGFPVVLHYQTISEPATIRKL
VSVLHKSSGEVLKKKPKCLGKGMNAMVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAA
GVVTEIKE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacagaaatgtccgaggctacaactatgatgaagaccttgacgatgatgat
ctgtatggacagtctgttgacgatgactactgcatctcccctgctacagcagcccagttc
atctactccagcaggcaggagagacccaacgttgagccacccctagaggaggaggagatg
gaggaagaggaggccatacacacctctcccaccctcacacacaacctcaaccccctggac
caaggcaagttgtactcgtgtctggacctgatgcgtgcggtgctgggtgatgccgtgcca
gagtcggtccttacccaggctgccttgcggtgcgccttcgaccctcagagagccttggac
gccgttctctcagtcgagagcgccgggctgccgcccctggacgccaggaccaataatgac
gcaccgctgccgcagagagcaaataaggagacagcagttgtaccaagagccaatcaggaa
gcctcagctgcaccgcgaccagagaaagctaaggaccgtgaggcggggcagtgtcaactg
gactcagaagttctgcctaaagtggcccgcatgaccgtctcagggaagaaacagaccatg
ggctttgacgtgccgagtacagaggagaacggggttgtccccagcccctccgtccatcgt
aggggtagccctgatgacatgaccatgaaaaccagccccgaaaccccctccaagcgtccg
gagacaccttctaaagggttcgggggggcagaggagcccacttccgtccccaccccagga
cgtaccccggggaaggccaagcaacagctgaacgtcagggccgagctggagaagagacaa
gggggcaagtctctactcaacctggtggttataggtcatgtggatgctgggaagagcact
ctgatgggtcacctgctgtacctgttgggaaacgtcaataaacgcaccatgcacaagtac
gaacaggagtccaaaaaggctggcaaggcctcgttcgcctacgcatgggtcctggatgag
accggggaggagaggaacaggggtgtaaccatggacgtggggatgactaagtttgagacg
gcctctaaggtggtgactctgatggacgctcctggacacaaagacttcatccctaacatg
atcactggcgcggcccaggcggacgtggcggtgttagtggtagatgccagcagaggtgag
tttgaggcagggttcgaggcgggtgggcagacgcgagagcacggccttctggtccgttcg
ttgggcgtcacgcagctcgcggttgccgtcaacaagatggaccaggtaaactggcaacag
gagcgattcaaagagatcatctccaaacttggacatttcctgaaacaggctggatttaag
gactctgatgtgttctacgtgccgaccagtggtctatcaggagagaacctgaccactaag
agttctgcactggcgctaacatcctggtactctggaccctgtctgctggaacagatcgat
tatttcaaaccaccccagaggtcgatagaaaagcccttccgactgtgtgtctcttcaaag
gttttatctgtggtcttccatggatcagggctctgtgttctaaccctgttctctgtggtt
ctagatcagggctcagggttctgtgtaacagggaagatcgaggcgggctacattcagaca
ggagaccgagtactggccatgccccccaatgagacatgcactgttaaaggtatctctctc
cacgatgatcctctggactgggcagcagcaggagatcatgtcagtctgaccgtcactggc
atggacatcatcaagattaatgtgggctgtgtgttctgtgatattaaggagccaatcaga
gcgtgttcccgcttcagggccagagtcctgctattcaacatagaggttcccatcacacag
ggcttccccgttgtgttgcactaccagacgatcagtgaaccagccaccattaggaagctg
gtcagcgttctgcacaagagcagcggggaggtgctcaagaagaaacccaagtgtctgggt
aagggtatgaatgcgatggtggagatccagacccagagacccgtggcgttggagctctat
aaggacttcaaggagctggggcgcttcatgctgagatatgtagggtcaaccatcgctgcc
ggggtcgtcaccgagatcaaagaatga
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