Oncorhynchus masou masou (cherry salmon): 135505870
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Entry
135505870 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03420
Nucleotide excision repair
omm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135505870
09124 Replication and repair
03420 Nucleotide excision repair
135505870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omm04121
]
135505870
03400 DNA repair and recombination proteins [BR:
omm03400
]
135505870
Ubiquitin system [BR:
omm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
135505870
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
135505870
TCR (transcription coupled repair) factors
Cul4-CSA complex
135505870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
135505870
NCBI-ProteinID:
XP_064781150
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All DBs
Position
2:44387265..44413662
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AA seq
1139 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGETIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDSGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAXEE
TDDMLVLSFVGQTRVLMLNGEEVEETELPGFVDNLQTFYCGNVAHQQLIQITSGGVRLVM
QDSKALVSEWKEPQGRNISLAACNSSQVVLAVGRALYYLQILSGELKQISTVEMEHEVAC
LDITPLGEGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEASYY
LLCALGDGALFYFGLDLTTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESP
RRICYQEVSQCFGVLSSRVEMQDASGTTAAVRPSASTQALSSSVSSSKLFPSSTSPHETS
FGEEVEVHSLLVVDQHTFEVLHAHQFLQSEYALSMVSCRLGRDLSVYFIVGTAMVYPEEA
EPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT
ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD
DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFSHGSLVLQNLGESS
TPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERK
TEQATGFIDGDLIESFLDLGRAKMQEVISTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtataattacgtggtaacagcgcagaaaccgacggcagtcaatgcctgcatcacc
ggccacttcacctctgcggaggacctgaatctgctcatagctaaaaacacacgcctggag
atctatgtggtcacagcggaagggctccggcctgtcaaagaggtgggcatgtacggcaag
atcgccgtcatggagctcttcaggccaaagggcgaaagcaaggacctgctgttcattctc
actgccaaatacaacgcctgcatcctggagtacaaacagaacggggagaccatcgacatc
atcacccgcgcccacggcaacgtgcaggaccgcatcgggcgtccctcggagacaggcatc
atcggcattgtagaccctgagtgccgcatgatcggcctgcggctgtatgacggcctattc
aaggtgatcccgttggaccgggagaaccgagaactcaaggccttcaatatccgcctggag
gagctgcaggtcatcgacgtccacttcctgtacggctgtcaggcgcccacagtctgcttc
atctatcaggaccctcaaggacggcatgtaaagacctacgaggtgtcgctgagggagaag
gagttcaacaaggggccgtggaaacaggagaacgtggaggcggaggcttctatggttatc
ccagtcccagaaccatttgggggggctataatcattggacaagaatccatcacctaccac
aacggggataaatacttggccatcgcacctcccaccatcaagcaaagcaccattgtctgt
cacaaccgtgtggaccccaacggctcgcgctacctgctgggggacatggagggccgcctg
tttatgctgctgctggagaaggaggagctgatggacggggccgtggtgctcaaggacctc
cgcgtcgagctgcttggagagacgtcaattgcggagtgcttgacctacctggacaacggt
gtggtgtttgtgggttccagactgggtgactcccagttggtcaagctcaatgtggacagt
aacgactcagggtcgtacgtggcggtgatggagaccttcacaaacctggggcccatcgtg
gacatgtgtgtggtggacctggagagacagggacagggccagctggtcacctgctctgga
gcgttcaaggagggctccctcaggatcatccggaatggtatcgggatccacgagcacgcc
agcattgacttgccagggatcaaaggtttgtggccccttcgctcagaggctngggaggag
acagacgacatgctggtcctgtctttcgtcggccagacaagggtgctgatgctaaatggg
gaggaggtggaggagactgagctgcctggctttgtggacaacctgcagaccttctactgt
ggcaacgtggcccaccagcaactcatccagatcacgtcaggcggtgtgcgtctagtaatg
caggacagcaaggccctggtgtctgagtggaaggagccccagggccggaacatcagcttg
gccgcatgtaactcctcccaagtggttctggccgtgggtcgcgccctctactatctccag
atcctctctggggaactcaaacagatcagcacagtggagatggagcatgaggtggcctgc
ctagacatcacgcccctaggggagggcggagagtcgcccctctgcgccgtgggcctgtgg
acggacatatcggcccgggtcctcaagctgccctgcttcaccgccctgcacaaggagatg
ctcggaggagaaattatccctcgctccatcctgatgacgacgttcgaggccagctactac
ctgctgtgtgccctgggagacggagctctcttctacttcggcctggacctgacgacaggc
gtgctgagcgagcggaagaaggtgactctgggcacccagcccacagtgctgaggaccttc
cgctcgctgtccacctccaacgtgtttgcctgctccgaccggcccaccgtcatctactct
tccaaccacaagctggtcttctccaatgtcaacctcaaggaggttaactacatgtgtccg
ctcaactccgagggctaccccgacagtctggcgctggccaacaacagcactctcaccatc
gggaccatcgacgagatccagaagctccacattcgcacggttcccctctacgagtctccc
aggaggatctgttaccaggaagtgtctcagtgtttcggggtgctgtccagccgcgtggag
atgcaggacgccagcgggaccacggcagcggtgcgccccagcgctagcactcaggctctg
tctagcagcgtgagctccagtaagctgttccccagcagcacctctccacacgagacctcc
ttcggggaggaggtggaggtgcacagcctcctggtagtcgaccaacacaccttcgaagtg
ctccacgcccaccagttcctccagagtgagtacgccctcagcatggtgtcctgccgcctg
ggcagggacctctcggtctactttatcgttggcacagcaatggtctacccagaggaggcg
gagcccaagcaaggccgcatcatcgtcttccactacactgatggtaagctgcagacggtt
gcagagaaggaggtgaagggagccgtctactccatggtggagttcaatggcaaactgctg
gccagcatcaacagcacagtgcgtctgtacgagtggaccgctgagaaggagctgaggacc
gagtgtaaccactacaacaacatcatggcactctacctaaagaccaaaggagacttcatc
ctggtgggagacctgatgaggtctgtgctgctgctggcctataaacccatggagggcaac
tttgaggagattgcccgtgacttcaatcccaactggatgagtgctgtggagatcctggac
gatgacaacttcctgggggcggagaatgccttcaacctctttgtgtgtcaaaaagacagc
gcggccacgacagacgaggagcgacaacacctgcaggaggtgggcgtgttccacctgggg
gagtttgtcaacgtcttctcccatgggtcactggtgctgcagaacctgggcgagagctcc
acccccacgcagggctccgtgctcttcggcaccgtcaacggcatgatcggtcttgtgacc
tctctgtccgagggctggtacagcctgctgctggacctgcagaaccgactcaacaaggtc
atcaagagcgtgggcaagatcgagcacagcttctggaggtccttccatacggagcgtaag
accgagcaggccacgggcttcatcgacggggacctcatcgagagcttcctggacctgggc
cgcgccaagatgcaagaggtgatcagcacgctacagattgacgacggcagcggaatgaag
cgcgaagccaccgtggacgaggtcataaagattgtggaggagctgacaaggatccactag
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integrated database retrieval system
