Oncorhynchus masou masou (cherry salmon): 135506255
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Entry
135506255 CDS
T10723
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04140
Autophagy - animal
omm04148
Efferocytosis
omm05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135506255
04148 Efferocytosis
135506255
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
135506255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135506255
Membrane trafficking [BR:
omm04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
135506255
Hops complex
135506255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_16
zf-C3HC4_2
zf-RING_11
zf_RING_Vps8
zf-RING_Vps41
DUF2175
zf-RING_2
zf-RING_UBOX
zf-ANAPC11
DUF5600
DUF1664
zf-rbx1
DUF4446
zf-C3H2C3
zf-RING_5
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
135506255
NCBI-ProteinID:
XP_064781849
LinkDB
All DBs
Position
19:38728048..38756386
Genome browser
AA seq
986 aa
AA seq
DB search
MSSILDEYEDSLNSRHPVQHSSRLSAANIGMTHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDRPNQVELGRKEDSRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLRTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGRPVPVCCIEVERGPESKVFIIATTRKRLFQFVGRVA
EGSEQQGFSSIFSQNQELLPSFQEFPFNMGYSEITFYTPKLRSCPKAFAWMMGNGVLYGQ
LDYVKLDSLLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFSDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQDKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSEKTQITLLVTWLTELYLNRLGLLQSDEGNHGVFQEKRDEFRKFLSSSKHKECL
YNNRTTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPILMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQQVNETIRYMEFCVYQL
TVTEEAIHNYLLSLYAKYKPDSLLWYLEQAGSHLSDIHYDLKYALRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKTCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELKQEMEEATESAKRIRED
IQEMRNKYGVVENQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVSPHLSTYKQTKLD
ELQKKLAAATQTSKSRHRTAPKEKEEGGDTASLGKGSAGVSREQIKSDIDDVIARECVYC
GELMIKSIDQPFIDPQKFEEEKSSWL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaggactcgctgaacagcaggcaccctgtgcaacac
agtagccgcctgtctgctgccaacatcggcatgacacactccgggttcgtgaatgtgaga
ctggaggaggagaagccgatattcaacaaacagaggattgatttctcacccccagagaag
atcaaccactttgctgtgtgcaacaatcagctatgcatgagtttagggaaggacactctc
ctgaggattgaccttgccaagccagaccggcccaaccaggtagaactgggaaggaaggag
gacagcagagtacacaagctcttcctggaccccacagggtcccacctggtgatttctctc
agtaccagcgagtgtctgtatctgaacagaaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtgtaggctggaacaagctgctgaggacagagaccaac
actgggcccatcctcgtgggaaccagccagggaattatcttcgaggctgagatctccgct
tcagagggaagcctgtttaacaccaaccccgaccagtacttcaaacaggtccactccctg
gaggaggacgggaggcctgttcctgtgtgctgtatagaggtggaacgaggtcccgagtct
aaagtcttcatcatcgccaccaccaggaagcgtttgttccagttcgtaggtcgtgtggca
gaggggtccgagcagcaaggcttcagctccatcttctcacagaaccaggagcttctgccc
agcttccaggagtttccgtttaatatgggctacagtgagatcaccttctacacccccaag
ctcaggtcgtgccccaaggccttcgcatggatgatgggtaacggagttctctacggtcag
ctggactacgtcaagttggactcgctgctcagtgatgtgcaggtgtgggactacacccca
gacatagacttcagtttcaacaagcccatctccatcgtgttgactcagttccactttcta
ctcctcctccctgaccgcgtcaaagccatctgcaccctcaacgggcaggtggtgtacgag
gatgtgttctctgataagttcggcactctgaagaagatgatcaaggacccggcaggaggc
ctggtgtggatctacactgagaaggccgtctttagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagcatgaacaagtttgacctggctaaagagtactgccgg
gaccgaccagagtgcatggacatggtcctggctaaagaggcagaacactgcttccaggac
aagcgttacctggagagcgcgaagtgctacgctctgacccagaactactttgaggagatt
gcgttgaagttcatcgaggcgaaacaggaagaagctctgaaagagttccttctgaagaaa
ctcaacaacctgaagcagagtgagaagacccagatcaccttactggtcacctggctgact
gagctctacctgaaccgcctggggcttctccaatcagacgaggggaatcatggggtgttc
caggagaagcgtgatgagttccggaagttcctcagtagttccaaacacaaggagtgtctc
tataacaaccgaacgaccatctatgacctgctggctagccacggcaacgtggacgacatg
gtctacttctctgtcatcatgcaggactatgagagggtgatctcccatcactgtcagcat
gatgactacagcgccgccctggaggtgctctccaagcactgcgacgagaagctcttctat
aagttctctcccatcctcatgcaacacatacctaagaaggtggtggacgcctggatccag
atgggatccagactggaacctaagaagctgatcccagccctggtcaactacagtcagatg
ggttcaacacagcaggtcaacgagaccatccgttacatggagttctgtgtctaccagctc
actgtgacggaagaggccatacacaactacctgctgtccctctacgccaagtacaaacct
gatagtctcttgtggtacctggaacaggctgggtcccacttgtcagatatccactatgat
ttaaagtatgccctgaggctgtgtgctgaacatggttacctccaggcctgtgttctggtc
tacaagatcatggagctgtatgaggaagctgtcgatctggccctacaagtggatgtggac
ttggccaagacgtgtgctgacctgcctgaggatgacgaggagttgaggaagaagttgtgg
ctgaagatcgctcgtcacgtggtgcaagaggagaaggatgtgaagaaggccatgaactgt
ctgtccagctgtaacctgctcaagatcgaagacatcctgcccttcttcccggacttcgtc
accatagaccactttaaggaggctatctgcagctctttagaggagtacaaccagcatata
gacgagctgaagcaggagatggaggaggcgacggagagcgccaagcggatcagagaggac
atccaggagatgaggaacaagtacggggtggtggagaaccaggagaaatgtgctgcctgc
gacttccccctcctcaacagacccttctatctgttcctctgtggtcacatgttccactac
gactgcctcttccaggaggtgtctcctcacctgtccacctacaagcagactaaactagat
gagctgcagaagaagttggctgcagccactcagacctccaagtctcgccaccgcaccgcc
cccaaggagaaggaggaggggggcgacaccgccagcctgggcaaaggaagcgccggggtc
agccgagagcagatcaagtccgacatcgatgacgtcatcgcccgcgagtgcgtgtactgc
ggcgagctgatgatcaagtcgatcgaccagccgtttattgatccacagaagtttgaggag
gagaagtccagctggctctga
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integrated database retrieval system
