Oncorhynchus masou masou (cherry salmon): 135506712
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Entry
135506712 CDS
T10723
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135506712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135506712
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135506712
mRNA degradation factors
5'-3' decay
Decapping complex
135506712
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
HTH_AraC
Motif
Other DBs
NCBI-GeneID:
135506712
NCBI-ProteinID:
XP_064782123
LinkDB
All DBs
Position
20:complement(4242310..4260529)
Genome browser
AA seq
805 aa
AA seq
DB search
MFRFQSLDEDCTLEKEEGLVEEEDEIDQFNDDTFGDGAIDDDWQEEHKRLAELEERKNDG
LGGLGLGGLGMGGMGGGDSSTVQLPPPASRVPHPSSLPPPHHSLSSMPPPGLEERGGGDL
AESLAMLILGADPAIASVGGPAGPGDRSTGLPPPPSMPQQHHHPSQLPSHHQLAPSGLPP
GPLHPSLLSYQQHQHLLRRGGAPMQQMNSHNIWENNMGFGPVSVTPGLITQMEDSPLMSI
IKEVGLPNRPPPVMSEDGRDFSERAPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHAMNHQ
QQIHHPTTVHVRAPVHHQHRYPPSFPERISPNTLLNMANSPLCRPPFPAGVGPVLSQIQR
AQMLNSQVAGFPRGCQGPPLLPGGGGFRPFFGQPPPHRMGPHHNHVPCPIIRHNTTHLHP
QHRRMLTQRMQSRGERGGRVGDWRSRDPYSNLMTQREKEWVAKIQMMQLQSTDPYLDDYY
YQNYFEKMEKRQERDRDGVRKEHTTKLITPQVAKLEHTYRPVQFAGSLGKLTVSSVNNPR
KMIDTVVTSRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFMQTPEEQREAL
LEQHKTHTLQLYASLKEKEWDDRVSDEQCLLIMSVRKGKRLISRLIPFLPPLQAATVVMG
IARNLHALAKKDKQDQALCWLVEPVAVVISSLSSAALTDLLQELQGSEGQLSKVLQNKFG
VTLLYLILSEGERMQSSDLNCQLMDDNRWTELVFSVTRELLNVPPSSLSPPLFTPPNLLS
LFSRYVDRQRLELLQEKLQISALSR
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcccttgatgaagattgtaccctggagaaggaggaggggctggta
gaagaagaagatgagattgaccagtttaacgatgacaccttcggagatggagccatcgat
gatgactggcaggaggagcacaagcggctcgcagagctcgaagaacgaaagaacgacgga
ctcggaggtttaggtctagggggactagggatggggggaatgggaggtggagactcctca
actgttcaactccctcctcctgccagtcgcgtcccccacccgtcatccctcccgccacca
catcactccctctcttcgatgccccctccgggcctggaggagagggggggaggcgaccta
gccgagtccctagccatgttgattctcggggcggacccggccatcgccagcgtgggtggt
ccagccgggcctggtgacaggtccactggtctccctcctcccccttccatgccccagcag
caccaccacccctcccagctcccttcccaccaccagctggccccgtcggggctgcccccg
ggcccactgcatccctccctgctgagctaccagcagcatcagcacctcctacgccgaggg
ggtgcccccatgcaacagatgaactcacacaatatctgggagaacaacatgggatttggg
cctgttagtgtcacccctggactaatcactcaaatggaggacagcccacttatgtccatt
atcaaagaggtggggctgcccaatcggcctccgccagttatgagtgaggatgggcgggac
ttttcggaaagggcccccccgcctcgctcgtcctctcccgtgattggaagcccaccagtg
agggctgtgcctatcgggactccgcccaagcagccgatgagtcatgctatgaatcatcag
cagcagatccaccaccccaccaccgttcatgtgcgagccccggtccaccaccaacaccgc
taccccccttccttccctgagcgcatctcccccaataccctcttaaacatggctaactct
cctctttgtcgtcctccattcccggccggcgtgggtcccgttctgtcccagatccaacgt
gcccagatgctcaactctcaggttgctggcttccccaggggatgtcagggccccccgttg
ctgcctggcggcggaggcttcaggcccttcttcggccagccccctccccacaggatgggt
ccccaccacaaccacgtaccctgtcccatcatccggcacaacaccacgcacctgcacccc
cagcacagacgcatgctcacccagaggatgcagagtagaggtgagcgtggcgggcgtgtg
ggggactggcggagcagagacccctacagtaacttgatgacccagagggagaaggagtgg
gtggccaagatccagatgatgcagctgcagagcactgatccctacctggatgactactac
taccagaattactttgagaagatggagaagaggcaggagagagaccgagacggtgtgagg
aaggagcacaccaccaaactcatcaccccccaggtggccaagctggaacacacctacaga
ccagtgcagtttgcaggctcactgggtaagctgactgtgtccagcgtcaacaaccccagg
aagatgatcgacacagtggtgaccagtcgcactgatgacgaggagaagagagagaaacag
gtgtggaataagaggcggcagatcctctacactgtggagaagatgtacagtctgctgctg
gaggtgcaggactttgagaagcgcttcatgcagacgccagaggagcagagagaggccctg
ctggagcagcacaaaacccacacgctgcagctctacgcctccctcaaggagaaggagtgg
gacgacagagtgagtgacgagcagtgtctgttgatcatgtcggtgcgtaagggaaagcgc
ctcatctccaggctcatcccattcctgcctccgctgcaggctgccaccgttgtcatgggg
attgcccggaacctgcacgccctggccaagaaagacaaacaggaccaggcactgtgctgg
ttggtggagcccgttgctgtggtgatctcttccctatctagcgctgccctcacagacttg
ctgcaggagctgcaaggcagcgagggtcaactgtccaaagtgttgcaaaataagtttggt
gtgacgctgctttacctgatcctgagtgaaggagagcgaatgcaaagctccgaccttaac
tgtcaactcatggatgacaatcgatggacggagttggtgttctctgtgaccagggagctg
ctcaatgtgcccccctcgtccctgtcccctcctctcttcacccctcccaacctgctctct
ctcttctcgcgctacgtagaccgacagaggctggagctgctgcaggagaagttacagatc
tccgcattgtccaggtag
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