Oncorhynchus masou masou (cherry salmon): 135508307
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Entry
135508307 CDS
T10723
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135508307
03015 mRNA surveillance pathway
135508307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135508307
03041 Spliceosome [BR:
omm03041
]
135508307
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135508307
Spliceosome [BR:
omm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
135508307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
135508307
NCBI-ProteinID:
XP_064784469
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Position
21:complement(38315618..38329992)
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AA seq
877 aa
AA seq
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MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASQKKIDEKENKDNRERESPRRRKSRSQSPRRRSPVKRE
RKRSHSRSPRRKPSPSSSPPPTAPAVTLVSVTLPQSTEEPQPEPDTSESAVPEPVIQEAS
STSDLVKPHTVVVVPDSVMKVKEPSPGKASKKERPKPREKEGRRDRPRHRSRSHSRRRPK
SRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGSNSSVP
RSPQKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPPGKARRSASPRARKGRSSAS
PSRSAGSKKKPGSRNDSLSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSSDTGSS
SSSEDEGSKRQGGGPAARNGNVRRRRSRSPSSPRRRHRDGSPRKRRSLSPGGRRSPPRRR
RSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPPPKCLSPMPK
RRPSRSPKRRSPPPQKRRTPPLPTSPPRHRRSPMLPSNRPGRGTRSPPAVHSNRLSPSPA
NRGRAMRGSASPQGRFDSSGTSPPGQRRQVSPSHSNRAIRRVSRTPEPRKNQRASQSPQP
MRRASSRSPSGSPKPGALKRPASGFPSSGCSASGSPSAPLAKKASSGSGSPSPNKNSDTE
AGGKKNKKHKKEKKHKKDKKHKKHKKHKKEKSGEKSGVLVAAGDGQENLGMEEDVDSDLK
KESDSEVEERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaagtcatcaaaccttggatcactcagcgagtgacagagatcctg
gggttcgaggatgacgtcgtcatagaattcatatttaaccagctagaagaaaagcacccg
gacagtaagatgatgcagatcaacctgacgggcttcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgcccaggacaacattgccggtatcccc
tctgccttcctggaacagaagaaagaggagatcaaacagagacagattgagcaggagaag
cttgcctctcagaagaagattgatgagaaggaaaacaaagataacagagaaagggagagc
cccagaaggaggaagtcaagatcacagtctccacggcgacggtctccagtgaagagagag
agaaagcggagtcactcccgctccccgaggcgtaagcccagtcccagcagctcccctcca
ccaacagccccagccgtcaccctggtcagtgttacattgccccagagcactgaggagccc
cagccagagccagacacctctgagagtgccgtacctgagccagtcattcaggaggcctct
tccaccagtgacttggtgaagccgcacactgtggttgtggtacctgactctgtgatgaag
gtcaaagaaccctccccaggtaaggcttctaaaaaggagaggcccaagcccagggagaag
gagggcaggagggacaggccccgccaccgctctcgctcccattcccgcagacgacctaaa
tcgcggtccagatcttactccccacgccggaggccgagccccaggagacggatgtcccct
cgtcgtaggagcccccccagacgtggccccccaggccccagacacaggcgcagtcgctcc
cctgtccgcaggcggcgctctcgctccccatcatcctctgggagcaactcctccgtgcct
cgctcacctcagaaggccatgaagagaacgtcaaccacacctcctaggaaacagccccgt
ggccacgcagctgatccctccctcagcccctccaggagaagagcccccaatggtagcccc
cctgggaaggcccgacgctctgcctcccctcgggcgagaaagggccggtcctcagcttcc
ccgtccagatcagctggttcaaagaagaaaccaggatcaaggaatgattcactgtctcct
gttccaaaacccaggcattctgaggcatcggaatcagagggggctaccgcagatcctgtg
cagcagcgacgtcagtatcgcaggcagaatcgtgagacatcttcagatactggatcatcc
tcctcatcagaggacgaggggtccaagaggcaaggcggagggccagcggcgaggaatggg
aatgtcaggaggaggcgcagtcgctccccctcttcccccaggagacgacacagggacggc
tcccccagaaaaagacgctccctctctcctggaggacgccgatctcccccacgccgtcgc
agatctccctctcctcctccgagacgcaggtctccctctccacctcctcgcagacgctcc
ccctcccccaggcggtactctccccccatccagcggcgctacagccctactcccctgggc
ccacagaagagaaggctatcggggtctccccctcccaaatgcctttccccgatgcccaag
cgccgtccctccaggtccccgaagcgcaggagtccccctccccaaaagagacgcacacct
cctctccccacctctcccccccgacacaggaggagccccatgctcccatccaaccggcca
ggccggggtacgcgctccccccctgctgttcacagtaaccgcctctccccctcccctgcc
aaccgtggtcgggccatgcgtgggtctgctagtcctcaggggcgctttgactcctcgggc
acctctccacctggtcagaggcgccaggtgtccccctcacacagcaacagggcaatccgc
agggtgtcccggacaccagagccccgcaagaaccagagagcctctcaaagcccccagcct
atgaggagagcgtcatcaaggtcaccgtctggttctcctaaaccaggagccttgaagcgg
ccggcctcaggcttcccctcatcgggctgctcggccagtggctcgccatcagcccctctg
gccaagaaggccagcagcggctctggcagcccttctccaaacaagaattcagacactgag
gctggaggaaagaagaacaaaaaacataagaaggagaagaaacataagaaggacaagaag
cacaagaaacacaagaaacacaagaaggagaagagtggtgagaagagtggagtcctggtg
gctgctggggatggccaggagaacctggggatggaagaggatgtagactccgaccttaaa
aaggaatcagacagtgaagtagaagagcgtctggacgacctggagaagcacctgcgagag
aaggcactgcgttccatgaggaaagctggaaagctgtccccgccactgtcttga
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