Oncorhynchus masou masou (cherry salmon): 135508313
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Entry
135508313 CDS
T10723
Name
(RefSeq) probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03082
ATP-dependent chromatin remodeling
omm03083
Polycomb repressive complex
omm04110
Cell cycle
omm04330
Notch signaling pathway
omm04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
135508313
03083 Polycomb repressive complex
135508313
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
135508313
04350 TGF-beta signaling pathway
135508313
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
135508313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omm03036
]
135508313
Enzymes [BR:
omm01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
135508313
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
135508313
HDAC complexes
Sin3A-HDAC complex
135508313
BRAF-HDAC complex
135508313
REST complex
135508313
SHIP complex
135508313
MiDAC complex
135508313
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
135508313
Heterochromatin formation proteins
Other heterochromatin formation proteins
135508313
Chromatin remodeling factors
NuRD complex
135508313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
135508313
NCBI-ProteinID:
XP_064784484
LinkDB
All DBs
Position
21:38375070..38383109
Genome browser
AA seq
498 aa
AA seq
DB search
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMTKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEDPNKRISIRAHDKRIACDEE
FSDSEDEAEGQGGGRRNAASFKKAKRTKTEEDKEKEGEEKKAGDDKKADDKKEVKEEKLP
EEEKMDTTKGPKEESKTP
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagttctcaaggaacaaagaaaaaagtgtgctactattacgatggtgatgtt
gggaattactactatggccaggggcatcccatgaagccacaccgtattcgcatgacacac
aacctcttgctgaactatggtctctacagaaagatggagatataccgacctcacaaagcc
agtggagaggagatgaccaagtaccacagtgacgactacatcaagtttctgcgttccatc
cggcctgacaacatgtcggagtacagcaaacagatgcagagatttaacgttggtgaggat
tgccctgtgtttgatggcctgtttgagttctgccagctctcaacaggaggctctgttgct
ggagctgtgaagctgaacaaacagcagacagacattgctattaactgggctggaggtctc
catcacgccaagaagtctgaggcgtcaggtttctgctatgtgaatgacattgtgctcgcc
attttagagttactgaaataccaccagagagttctgtacatagacattgacattcaccat
ggagatggagtggaggaagcgttctacaccacagaccgagtcatgaccgtgtccttccac
aagtacggagagtacttccccggcactggagacctgagggatattggcgcagggaaaggc
aagtactatgctgtgaattaccctctgagagatgggatagacgacgagtcttacgaagcc
atattcaagcctatcatgactaaagtgatggagatgtaccagcctagtgcagtggttctt
cagtgtggagccgactccctctcgggagacaggcttggctgctttaacctcaccatcaaa
ggccatgctaagtgtgtggagtacatgaagagcttcaacctgcccctgctgatgctgggt
ggtggaggctacaccatccggaacgtggcccgctgctggacctatgagacagccgtggcc
ctagacagctccataccaaacgagcttccatacaatgattactttgagtactttgggcca
gacttcaaactgcacatcagtccctccaacatgaccaaccagaacaccaacgactacctg
gaaaagatcaagcagcgtctgtttgagaaccttcgaatgctgccccacgccccgggggtc
cagatgcaggccatcccagaagacgccgtgcaggaggacagtggagacgaggaggaggaa
gaccctaacaaacggatatccattcgcgcccatgacaagaggatagcgtgtgacgaggag
ttctcagactctgaggacgaggctgagggtcaagggggcggacggagaaatgctgccagc
ttcaagaaagccaagagaacaaagactgaagaagacaaagaaaaagagggagaagagaag
aaagcaggcgatgacaagaaagctgatgacaagaaagaagtaaaagaagaaaagctgcca
gaggaggagaaaatggacacaacaaaggggccaaaagaggagtccaagacaccgtga
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