Oncorhynchus masou masou (cherry salmon): 135508315
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Entry
135508315 CDS
T10723
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135508315
09123 Folding, sorting and degradation
03018 RNA degradation
135508315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135508315
03041 Spliceosome [BR:
omm03041
]
135508315
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135508315
mRNA cycle factors
Stress granule specific factors
135508315
Spliceosome [BR:
omm03041
]
Complex C
Other components
Complex C specific factors
135508315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_5
RRM_7
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
135508315
NCBI-ProteinID:
XP_064784486
LinkDB
All DBs
Position
21:38402296..38420095
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AA seq
639 aa
AA seq
DB search
MNTANEGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
SQPTDAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EADLGAKAKEFTNVYIKNFGDDMNDDKLKEMFDQYGKTLSVRVMADPSGKSRGFGFVSYE
KHEDANKACEEMNGLEFNGKTVFVGRAQKKMERQAELRRKFEMLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFTPFGSITSAKVMLDEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPIYVALAQRKEERKAHLTNQYVQRIAGMRAMPANAIINQFQPASGYFMPAVPQAQNRT
TYYAPNQLAQMRHNPRWHQQGSRGQGGFQGMPNSLRQPGPRANPRHLTPNASAQGPRSMG
PSGAQRIGIAGQAIGPHPSMGVPAPRAMTFYKYTTNVRNTNPQVAHPIASQQSQQAVDVQ
GQEPLTASVLAAAPPQEQKQMLGERLFPLIQPMHPSLAGKITGMLLEIDNSELLHMLESN
ESLCSKVEEAVAVLQAHQAKKDATQKVGDITTTTAATTS
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgaatgaggggagttatccaatggcttctctatatgttggcgacctgcac
cctgatatcactgaagctatgctgtatgagaaattcagcccagctggaccagtgctgtct
attcgagtatgtcgtgatatgatcacccgacgctctctgggttatgcctatgtgaatttc
tcgcaacccacggacgctgagagagccctggacaccatgaactttgatgtggtgaaaggg
aagccaatcagaatcatgtggtcacagcgagatccctcactcaggaagtctggggtgggc
aacgtgttcatcaagaacctggacaagaccattgataacaaggccctctatgacaccttc
tctgcctttgggaacatcctgtcttgcaaagttgtatgtgatgagaatggatccaaggga
tacgcgtttgtgcactttgaaacgcaggacgcagctgaccgcgccatcgagaagatgaac
ggcatgcttctgaacgatcgcaaggtgttcgttggacgattcaagtctcggaaggagagg
gaggcagacctgggggccaaagcaaaggagttcaccaacgtctacatcaagaactttgga
gacgacatgaatgatgacaagctaaaggaaatgtttgaccaatacggtaaaactctcagt
gtgagggttatggctgaccccagtggcaaatccagaggttttggctttgtgagttacgag
aaacacgaggacgctaacaaggcatgtgaggagatgaacggtctagagttcaacgggaag
accgtcttcgtggggcgtgctcagaagaagatggaacggcaggcggagctaaggagaaag
tttgagatgttgaaacaggagaggatcagccgttaccagggcgttaacctttacattaaa
aacttggacgacaccattgacgacgagaaactgcgaaaggagtttaccccattcgggtcc
atcaccagtgccaaggtgatgctggatgaggggcggtccaagggctttgggttcgtctgc
ttctcctctcctgaggaggccaccaaggctgtgactgagatgaatgggcgcatcgtgggc
tccaagccaatctacgtggccttggctcagcgcaaagaagagcgcaaagcccacctcact
aaccagtatgtgcagcgcatcgctggcatgagggccatgccagccaacgccatcatcaac
cagttccagcccgccagcggatacttcatgcctgcagtgccacaggcccagaacaggacc
acctactatgcacccaatcagctggcccagatgaggcacaacccccgctggcatcagcag
ggtagcagaggccaaggtgggttccagggaatgcccaactccctgcgccagcctggtcca
cgtgccaacccgagacacctgactcccaatgctagcgcccagggcccccgaagcatgggg
ccttctggagctcagagaattggaattgctggccaggccataggtcctcatccctccatg
ggagtccctgcccctcgggccatgacgttctacaagtacaccacaaacgtacgcaacact
aacccccaggtggcccaccccatcgcctcacagcagtctcaacaagctgtagatgtgcag
ggtcaggagcctctcacagcctctgtgctggctgctgcaccacctcaggagcagaagcag
atgcttggggagcgcctgttccccctgatccaacccatgcaccccagcttggcagggaag
atcactggaatgctgcttgagatcgacaactctgagctgctgcacatgctggagtccaac
gaatccttgtgctccaaggtggaggaggctgttgccgtgctccaggcccaccaggcaaag
aaggatgccacacagaaagtgggagacatcactacaaccactgctgccactacctcctga
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