Oncorhynchus masou masou (cherry salmon): 135509416
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Entry
135509416 CDS
T10723
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135509416 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135509416 (sf3b3)
03041 Spliceosome [BR:
omm03041
]
135509416 (sf3b3)
03036 Chromosome and associated proteins [BR:
omm03036
]
135509416 (sf3b3)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
135509416 (sf3b3)
Spliceosome [BR:
omm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135509416 (sf3b3)
Complex B
135509416 (sf3b3)
Complex C
U2 SnRNP specific factors
135509416 (sf3b3)
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
135509416 (sf3b3)
TFTC complex
135509416 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
135509416
NCBI-ProteinID:
XP_064786132
LinkDB
All DBs
Position
22:36128157..36167935
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AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATSMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKEDELGVKGTV
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLVNPIQGTTLDLVQLEQNEAAFSVTVCRFASGG
DDWYVLVGVARDMILNPRSVGGGFIYTYRLGGGGDKLEFMHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVTDVQESLFWVRYKRNENQ
LIIFADDTHPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtataacctgaccctgcagcgtgccactggcatcacccacgccatccatgga
aacttctcaggaaccaagatgcaggagatagttgtttccagggggaagataattgagctg
ttgcgtccagatgccaacacagggaaggttcacaccctgcttaccatggaggtgtttggc
atcattcgctccctcatggccttcaggctgacaggaggaactaaagactatattgtggtg
ggcagtgactcaggccgcatcgtgatccttgagtaccacccctccaagaacatgttcgag
aagatccaccaggagacctttggcaagagtggatgtcgtcgcatcgtccctggacagttc
ctcgccgtcgaccccaagggcagagcagtcatgataggtgccattgagaagcagaagctg
gtgtacatccttaacagagatgcagcagcgcgtctcaccatctcctctcccctggaggct
cacaaggccaacacgctggtctaccatgtggtaggagttgatgtgggctttgaaaacccc
atgtttgcctgtctggagatggactatgaggaagctgacaatgaccccactggcgaggct
gcagccaacacccagcaaaccctgaccttttatgagctggacctgggtctgaaccacgtt
gtgcgcaagtacagcgaggccctggaggagcacggcaacttcctcattacagttcctgga
ggctctgatgggcccagtggagtactcatctgttcagagaattacatcacctacaaaaac
tttggggaccagcctgacattcgctgtcccatcccacgcaggaggaatgacctggatgac
cctgagcgaggcatgatcttcgtctgctcagccacacacaagaccaagtccatgttcttc
ttcctggcccagacggagcagggtgacattttcaaggtcaccctggagaccgatgaggag
atggttacagagatcaggatgaagtacttcgacaccatacctgtagccacatccatgtgc
gtgctgaagaccggcttcttatttgtgtcctcagagtttggtaaccattacctgtaccag
atagcccatctgggagatgacgatgaagagccagagttctcctctgccatgcccctggag
gagggagataccttcttcttccagccacgccccctcaagaacctggtgctggtggacgag
caggagaacctctcccccatcatgtcctgccagattgctgacttggctaatgaggacact
cctcagctgtatgtggcctgtggcaggggacccaaatccaccctccgtgtccttagacat
ggactggaggtatcagagatggctgtgtctgagctgcccggtaaccccaatgctgtgtgg
actgtgcgccgacacattgaagatgagtttgacgcgtacatcatcgtttccttcgtcaac
gccaccctggttctgtctatcggtgagaccgtagaggaagtgacagactctggcttcctg
gggaccacccccaccctctcctgctctctgctcggggaggatgctctggtgcaggtgtat
cctgatgggatccgtcacatccgtgctgataagcgtgtgaatgagtggaagactccaggg
aagaagaccattgtgcgctgtgcagtcaaccagaggcaggtggttatcgctctgaccgga
ggagagctggtctactttgagatggacccttctggccagctgaatgagtacacagagagg
aaggagatgtcagctgatgtggtgtgtatgagcttggccaatgtcccccctggcgagcag
cgctcccgtttcctggcggtggggctggtggacaacaccgtccgcatcatctcactggac
ccctcggactgtctccagcccctcagtatgcaggccctgcctgcccagcctgagtctctg
tgtatagtggagatgggaggagtggagaaggaagatgagctaggagtgaagggcactgtc
ggcttcctctacctcaacatcggactgcagaatggtgtgttgctcaggaccgtgctggac
ccagtgactggagacctgtctgatactcgtactcggtacttggggtcgcgacctgtgaag
ctcttccgcgtcaggatgcagggacaggaagctgtgttggccatgtcgagtcgctcctgg
ctgagttattcctaccagtcccgattccatctgacgcccctgtcctatgagacgctggaa
tatgcctctggcttcgcctctgaacagtgtccagagggcattgtggcaatctctaccaac
accctgaggattctggccttggagaagctgggtgccgtgttcaaccaggtggccttcccc
ctgcagtacacacctcgcaagtttgtcattcacccagagacaaacaacctgatactcata
gagactgatcacaatgcctacacagaggccaccaaggcccagcgcaagcagcagatggca
gaggagatggttgaggcagctggtgaggatgagagggagctggcagcagagatggctgct
gccttcctcaatgagaacctgccagaggccatctttggggcgcccaaggccgggtctggc
cagtgggcctctctggtgcgtctggtcaaccccatccagggaaccactctggaccttgtc
caactggagcagaatgaggctgccttcagtgtgactgtttgtcggtttgccagcggaggt
gatgactggtatgtgctggtgggggtggcccgggacatgatccttaacccccgctctgtg
ggaggcggttttatctacacctatcggctgggagggggaggggacaaactggagtttatg
cacaagactccagtggaggacgttcctctggcaatcgctccgttccagggccgtgtgctg
gtgggcgttggcaaactgctgcgcatctatgacctgggcaagaagaagctgctccggaag
tgtgagaacaagcatgtgcccaacctggtgactggtatccacaccatcggtcagcgggtc
atagtgactgatgtacaggagagtctgttctgggtgcgctacaagcgcaacgagaatcag
ctgatcatcttcgctgacgacacccaccctcgctgggtcaccactgcctgcctgctggac
tacgacaccatggcttcagccgacaagtttggcaacatcagcattgtacgccttccccct
aacaccagtgacgatgtggatgaggacccaactgggaacaaagcattgtgggatagaggt
ctgctgaacggagcttctcagaaggctgaagtgatcatgaactaccacattggtgagaca
gtgctgtcactgcagaagaccacactgatccccggaggctcggaatctctggtctacaca
actctgtctggaggcatcggcatcctggtgcccttcacttcccacgaggatcatgacttc
ttccagcacttagagatgcatatgcgctcagagttcccccctctgtgtggcagggaccac
ctcagcttccgctcctactacttccctgtaaagaatgtgatagatggagatctgtgtgag
cagttcaactccatggacccccacaagcagaagagtgttgctgaggagctggaccgtact
ccccctgaggtctcaaagaaactggaggacatccgcacacgctatgccttctag
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integrated database retrieval system
