Oncorhynchus masou masou (cherry salmon): 135509608
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Entry
135509608 CDS
T10723
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135509608
Transcription factors [BR:
omm03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
135509608
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
HMG_box
HMG_WDHD1
HMG_box_2
Activator_LAG-3
HTH_63
Motif
Other DBs
NCBI-GeneID:
135509608
NCBI-ProteinID:
XP_064786473
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All DBs
Position
22:complement(47986429..48137940)
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AA seq
669 aa
AA seq
DB search
MMSSKRATPPFPPATEEEEAIGQDSVGWANEDRESHDQPVTPPLHGKPFPEEHQPIRDSQ
PESDWESIGPTQTDNASSKGCSLNSYRNNSISPPKPEECSQDCGELLGGSAFRTPERRKG
SLADVVDTLKQKKLVELTKTEQDESTCAETLLSRDWKDRRDRLNASELLGEVKGTPESLE
EKERQLSTMIGQLISLREQLLAAHDEQKKMAVSQMEKQRQQMELARQQQDQITTQQQQLL
QQQHKINVLQQQIQVQGHMPPLMIPVFPHDQRSMAAAAAQQGFLFPPNMSYKPGDNYPMQ
FIPSTMAAAAASGLSPLHQQLYAAQLASMQISPGAKMASLPQPQNSSGPLSPSALKSKKR
ASSPVTHIKEEGSTQPLNLSARPKTGEPHHSPSSPSHGLYPGNKSRPISMGKRRIPSPLS
NMGRGSLDILSSLNPTPLFGDQDAVMSAIQEARKMREQIQREQLHHQQQSLEAKLTALSG
MSFSNGSKERMHFESLSQHLGNLGEDGKTGHRVIDLTRHEDVDGVSCTTEARVFRETRGR
NSTEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQ
AHLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFQCGVRRERH
STDLLLCGL
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgtccaaacgagccacacctccgtttcccccggcgacagaggaagaggaagcg
ataggtcaggacagtgtgggctgggccaatgaggacagagaaagccatgaccagccagtt
acgccccctctgcacggcaaacccttcccagaggagcaccagccaatcagagacagccag
cctgagtcggactgggagagtataggccctactcagacagacaatgctagtagcaagggc
tgttccttgaactcctaccggaataactctatatctccaccaaagcctgaggagtgttcc
caggattgcggcgagctgctaggcggatccgccttcagaacaccggaacgccgcaaagga
agcctggccgacgtggtggacacactgaaacagaagaaactagtagagctgacaaagaca
gaacaggatgagtctacctgtgcggagacacttctgtccagggactggaaagacaggagg
gacagactgaatgccagcgagctcctaggagaggtcaaaggtaccccagagagtttggag
gagaaggagcgtcagctttcgaccatgattggccagctcatcagcctgcgggagcagctc
ctggcggcccacgacgagcagaagaagatggccgtctcacagatggagaagcagaggcag
caaatggagctggcccgtcagcagcaggaccagattacgacacagcagcagcagctcctg
cagcagcagcataagatcaacgttctccagcagcagatacaggtgcagggtcacatgcca
cctctgatgatcccagtgtttcctcacgaccagcgctctatggcggccgctgccgcacag
cagggcttcctcttcccaccgaacatgtcctacaagccaggtgataactaccccatgcag
ttcattccatccacaatggcagctgcagccgcttcaggactgagcccactccatcagcag
ctgtacgctgcccagctggccagcatgcagatctctcccggagccaaaatggcctccctg
ccgcagcctcaaaactcctcaggccccctctcgccctctgccttgaagagtaagaagaga
gcatcgagtcctgtcactcacattaaggaggaaggatcgacacagcccctgaatctctca
gcccgacccaagactggcgagccccaccactccccatcctcgccgtcacacggcctgtac
cctggcaacaagagcaggcccatcagcatggggaagagacgcatccccagccccctctcc
aacatgggcaggggctcactggacatcctgtctagcctgaaccccacgccactgtttggg
gaccaggatgcggtgatgagcgccatccaggaggcgaggaagatgagggagcagatccag
agagaacagcttcatcaccagcagcaaagcctggaggccaagctcacggccctgagcggc
atgagtttcagcaatggcagcaaggagcggatgcactttgagagtttgagtcagcacctg
ggcaacctgggagaggatggaaagacaggccacagggtcattgacctcaccagacatgag
gatgttgatggtgtctcctgcactacagaggcccgggtcttcagggagaccaggggcagg
aacagtactgagccccacattaagagacccatgaatgccttcatggtgtgggccaaggac
gagaggaggaagatcctgcagaccttccccgacatgcacaattccaacatcagcaagatc
ctgggctctcgctggaagtccatgaccaaccaggagaagcagccatactacgaggaacag
gcccatctcagtaagatccacctggagaagtaccccaactacaagtacaagccccggccc
aagaggacctgcatcatcgacggcaagaagctacgcatcggcgagtacaagcagatgatg
cgctcgcggcgacaggagatgaggcagttcttccagtgtggggtaagaagagagagacac
tctactgatctgctgttgtgcggtctttag
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