Oncorhynchus masou masou (cherry salmon): 135510318
Help
Entry
135510318 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04382
Cornified envelope formation
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135510318
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135510318
09142 Cell motility
04820 Cytoskeleton in muscle cells
135510318
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135510318
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omm04147
]
135510318
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135510318
Exosome [BR:
omm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135510318
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135510318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135510318
NCBI-ProteinID:
XP_064787227
LinkDB
All DBs
Position
23:12318592..12548546
Genome browser
AA seq
1676 aa
AA seq
DB search
MKFWICVLAVSWAVEATHGGTSQGPCSGLDCSGGCNCNPEKGGRGRPGALGPVGPGGPEG
FPGDQGPLGQKGEKGHFGRMGPSGLKGDKGPMGVPGFPGNDGVPGHPGQDGGRGLPGFDG
CNGTQGDPGPRAVDGGIPGASGLPGPKGPKGQKGEAVYVGTRGGAPGLPGLDGVPGPGGP
DGRAGDIGPSGPDGFLGNPGPPGPPGPVGSPSLGFRGEPGAKGNTGPPGPRGVPGDEPLV
GSSITTIYKGDKGEGGYKGVRGPSGRPGPAGPFGYPGEKGENGILGYPGGRGPPGFNGPP
GSPGRPGFTGSPGFPGQPGYSGPKGDQGEQGPPGPPIYADTQGLAVQGAPGDNGIDGFPG
QPGDTGSPGFPGQPGRPGDSFGDGRGGSPGFPGTLGPKGERGNPGRQSYGPEGLPGGPGL
PGPPGPPGPPGRSVSIQPGRFDNLPGAPGRPGGQGPPGASGYKGPKGELGDCNCLGGGTT
GGVGAPGAPGSDGRPGAFGRKGESGDPGIPGFGGQPGTPGRVGERGFFGRKGEKGASFYP
TFSGGIQGEQGAQGLRGPPGNMGRPGRDGLPGSPGQPGPPADVDGYGTIGERGFPGISGA
KGRAGEPGENGIGYQGSVGSRGFPGDSGFAGLPGQPGLPGPPGLTLPCRLPGEDGNPGLP
GIPGRLGPKGESGFPGGPGRPGFDGGKGERGDPGYGGQPGPQGFPGPRGDAGGPGIPGEG
RPGAPGKNGLPGRPGGKGRPGEVLGSSTGLPGTPGFPGGPGDKGEPGASGRPGGSGFDGR
SGIPGAKGERGTDGYPGTLGLPGLPGDRGNGFPGPAGPAGSKGFPGPPGYPGLKGARGDT
GFPGPTGRKGQPGQPGGDGSSGLRGLQGPLGPGGRNGIPGGPGRKGERGYPGLVGFPGMP
GNPGRPGGPGGKGAPGFSGKDGLPGDFGAPGPKGDQGYRGLPGPPALPPRVDYLEKGQRG
DNGANGLPGFPGPRGDKGFPGQPGRQGLPGLPGYADRAKGEPGLPGLPGRPAGPGYPGPV
GSPGIIGFPGMPGPRGDDGRPGFPGNPGVPGQPGAKGERGDSSGYPGSPGAKGESGTPGY
PGGQGANGAPGDNGFPGGPGFSGQKGEPGVPGRPGLLGTPGFTGAKGLNGYPGGRGLDGT
TGRPGSPGSSGEKGLSGSPGLDGLNGLAGPNGLPGTPGYSEEGRPGTPGAAGLKGERGSS
IPGXPGYNAEKGARGESGGPGMTGFPGLPGRRGETVGSNIPGPLGDPGLPGLDGEEGYGG
PPGPPGPPGPSTAQGDRGDAGLPGFPGTPGRRGDPGGPGGPGREGSPGFNGERGDSGYSG
VSGTKGYPGDPGYYGGKGPKGRKGSSGRKGPPGITLPRPRFPTPYGDLGGPGLNGAPGAM
GEPGNPGIPGRGGPKGRPGAVGKLGRNGGPGLDGPLGDPGSPGFPGPSGSQGLPGKPGLQ
GPPGSVARSRSVGFTLVKHSQNNQVPMCPQGMSRLWEGYSLLYVEGQEKAHNQDLGMAGS
CLPRFSTVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVGEEAISQYISRCSVCEAM
SQAVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFI
ECNGAKGTCHFFANKYSFWLTTVEPNREFNPPPMDTLKGGNQLSRVSRCQVCSKIL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctggatttgtgtacttgctgtcagctgggcagttgaagcgacacacgggggg
accagccaggggccctgtagtgggctggactgtagtggaggatgtaactgtaacccagag
aaaggtggcagggggcgtccaggggcattggggccagtaggacccggtggaccagagggg
ttcccaggcgaccaagggcctttagggcaaaaaggagagaagggccacttcggacgcatg
ggcccctctgggctgaaaggagacaaggggcccatgggcgtaccagggttcccaggaaac
gatggagtcccaggtcacccaggtcaggacggtggcaggggtctaccagggtttgatgga
tgtaacggtacccagggagacccaggtcccagagctgtagatggaggaatacctggagct
tcaggactccctgggcctaagggtcctaaagggcagaagggagaagctgtatatgttgga
accagagggggagctcctggtttgcctggactggacggtgtacctggtcctggaggtcct
gatggaagggctggtgacatcggccccagtggtcctgatggattccttggtaatccaggt
ccccccggtccccctggtcctgtagggagccccagcctcggcttccggggggagccagga
gctaagggcaacacggggccacccggacctcgaggcgtgcccggcgacgagccgctagta
ggctcatctattaccactatctacaaaggagataagggggaagggggttacaaaggagtg
cgtggaccatctggtagacccggcccagctggtccttttggctatcctggtgagaaggga
gagaatggaattctgggatatccagggggacggggtcctcctggttttaatggccccccc
ggatctccaggaagaccaggattcacaggcagtccagggttccccgggcaaccaggctac
agtggacctaagggtgaccagggggaacaggggcctcccgggccccccatctacgcagac
acacaagggttggctgttcaaggagcaccaggtgacaatggtatcgacggtttccccggc
caacctggtgacactggctctccagggtttccaggacaaccaggacgaccaggcgactcc
ttcggcgatggtcgagggggcagcccagggttccctggcaccttaggacctaagggagag
aggggtaaccccggcagacagagctacggccctgagggcctaccaggaggaccgggatta
ccaggaccccccggacctcccggaccaccaggcagatctgtcagcatccagcccggcagg
tttgacaatctaccaggagcgccaggacgaccaggaggccagggaccacctggagccagt
ggatacaaaggacccaaaggggaactgggtgactgtaactgcctgggaggaggcaccacg
ggtggggtgggggccccgggggctcctgggtctgatggaagacctggtgccttcggcagg
aagggcgaaagcggagacccaggcatacccggtttcggaggacaaccaggaacacctggc
cgtgtgggcgagaggggtttcttcgggcgtaaaggagaaaagggtgcctccttctacccc
acgttcagcggagggatccagggtgaacaaggggcccagggccttcgagggccccctgga
aacatgggccgacccgggagagacggacttcctgggtcccccggacagcctgggcctcct
gctgatgttgatggctatggaaccattggagagagaggattcccagggatctcaggcgcc
aaaggtcgcgccggtgaacctggagagaacgggattggctaccagggttccgtcggctcc
cgtgggtttccaggcgactcgggctttgcggggttaccagggcaacctggtttacctggc
cctccagggctgacgctaccatgtcgtctacctggtgaggatggaaacccaggcctccct
ggaatacctggaagactaggtcccaagggcgagtcaggtttcccagggggtcccggtcgg
cccggttttgacggagggaagggagagagaggagacccaggttacgggggccagcctggg
ccacaaggtttccctggccccagaggagatgcgggtggcccaggtatcccaggcgagggt
cgtccaggggccccaggaaagaacgggctcccggggcggccaggggggaagggccggccg
ggggaggtgctggggtcctcaacagggctccctggaacacctgggttcccaggaggacca
ggagacaagggagagccaggagcatcaggacgtcccggaggatcaggttttgatggtcgg
tcgggcattcccggagctaagggtgagcgcggtacggatggctacccaggaactctaggt
cttcccggacttcctggagacagaggcaatggatttcccggtcctgctggaccagccgga
agcaaaggatttcctggtcctccaggctaccccggtttaaaaggagccagaggtgacacg
ggcttcccaggcccaactgggaggaagggacaaccaggacaaccaggaggggatggatca
tcaggactcaggggccttcagggaccactgggcccagggggaagaaacggcatccctggg
ggaccaggaaggaagggcgagagaggttaccctggactggtaggattccccggaatgcca
ggtaaccctggaagacctggtggaccaggaggtaaaggagctccggggttctcaggaaaa
gacggcctgcccggtgacttcggagcgccaggacctaaaggtgaccaaggttaccgtggt
ctccccggcccacccgctctgccccctagagtagattacctggagaagggacagaggggc
gacaacggtgccaacggactacctggtttccctggacctagaggtgataagggtttccca
ggccagcctggtcgtcagggtttgcccgggctgcctggttatgctgacagggctaaaggg
gaaccaggactccccggtctccccggacgcccagccgggccaggctacccgggccctgtt
ggatctcctggtatcatcggcttccctggcatgcctggaccaaggggtgacgatggcagg
cctggtttccctggtaaccctggagtccctggtcagccaggtgctaaaggggagagaggt
gactcgtccggctaccccggaagtcccggagctaaaggtgagtccggaacccccggttac
ccaggtggccaaggtgctaatggcgcccccggcgacaacggtttcccagggggccctggg
ttcagtggacagaagggagaaccgggagttcctggaagacccggactcttaggtacccct
ggtttcaccggggctaagggtctgaacggatacccaggaggaagaggtctcgacgggacg
actggccgccccggctcccctggatcatctggagaaaaaggtctgtcgggatctcctggt
cttgatggactcaacggactggctggacctaacggtctaccaggaaccccgggttatagt
gaggaggggcgccccggcacccctggagcggccggtttgaagggagagaggggatcctcc
atccctgganccccggggtacaacgcggagaagggagcgagaggagagtcagggggtcct
ggtatgacgggcttcccaggtctgcctggtcgccgtggggagacagttggctccaatatc
cctggacctctgggagacccaggcctgcccggactcgatggagaagaaggttacggtggt
cctccaggccccccaggcccaccggggcccagtacggcccagggagacaggggtgacgct
gggctacctggcttccccggcacccctgggagacgtggagaccctggaggtcccggtggc
ccgggaagggaaggcagccctgggttcaatggagagagaggcgactctgggtacagtgga
gtgtcaggaaccaaaggctaccctggagatccaggatattacggagggaaaggacccaaa
ggaaggaaaggttcttctggtcgtaaggggcccccaggtataactttaccccgcccgaga
ttcccgacgccgtatggagacttgggaggccctgggctcaacggagctccaggggccatg
ggagaaccaggcaatcccggcattccaggcagagggggtcctaaaggcaggcccggtgcg
gtggggaagctggggaggaacggagggccaggtctggatggacctctgggagaccctggt
tctcctggtttccctggaccttccggatcacaaggtctgcctggtaagcctggtctgcag
ggtccccctggcagtgtggcccgcagcaggagtgttggtttcaccctggtgaaacacagt
cagaacaaccaggtacccatgtgtccccagggcatgtcccggctctgggagggatacagt
ctgctctacgtagaggggcaggagaaggcacacaaccaggatctcggtatggcgggctcc
tgcctcccccgtttcagcactgtccccttcctctactgcacgcccaacgagatctgttac
tacgccagccgcaacgacaagtcctattggctgtccaccactgcgcccatccccatgatg
ccggtgggagaggaggccatcagccagtacatcagcaggtgctccgtgtgcgaggccatg
tcccaggctgtggctgtccactcccaggacctcaccatccccacctgccctgctggctgg
aggtccctctggatcgggtactccttcctcatgcacacagctgccggggcagagggcgga
ggccagtcccttgtttcacccgggtcctgtctggaagacttccgtgcaactcccttcatc
gagtgtaacggggctaagggcacctgccacttctttgccaacaagtacagcttctggctg
accacggtggagcctaaccgcgagttcaacccccctccgatggacacgctgaagggaggc
aaccaactcagcagagtcagtcgctgtcaagtctgcagtaagatcttgtag
DBGET
integrated database retrieval system
