Oncorhynchus masou masou (cherry salmon): 135510610
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Entry
135510610 CDS
T10723
Name
(RefSeq) synaptopodin-2-like isoform X1
KO
K24066
synaptopodin-2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135510610
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
omm04990
]
135510610
Domain-containing proteins not elsewhere classified [BR:
omm04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
135510610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
135510610
NCBI-ProteinID:
XP_064787739
LinkDB
All DBs
Position
23:complement(24673119..24735944)
Genome browser
AA seq
1864 aa
AA seq
DB search
MGTGDYICVTVRGGAPWGFSLCQGEGDAYRPLQVYQVEEGGRASLAGVCEGDEVVSMNGE
PCGDLSLPEAIALIDACVNCLQLLVKRCCALTPEAFNSEETYFGTRESSGEALESTNLRI
LSLCRSQPPRELYIAESQDETYYGETESDTEAARGTHLVRTQLCGPESQLLGGGGYGGRV
GPQGGSFSPGAMVELQLSLSEHTLEDPVCTSLGSALGIEGEIQAREALQNKALLHTTTHS
LYVCGPAREPLSQHGVVEITLQHPAAGRGSPCLVEGEGACGASGNVGGAPREEGAGQSQG
APASFTVSFGIPKEGAEPAEEPDSDSEKDLGKPNKHRARHARLRRSESLSDKQVKEAKSK
CKRIAILLNADAPNPNNKGVLMFKRHQQRAKKYTLVSYGTGESEPEYEEDDSEEDYEEKD
PRAIKFTLLATTSDSELDEDFITNAHGGGRVITCDWDTGLLNIERKLNSGEEMEQLPNTT
GKGATMFSQRRQRMDEIAAEHEEMRRQGIPVEGVQEVEKHAAYQQMEERSYMQATTESQA
YMDVNMHQKQQQQYQQFQEQQYYEQQQQQQQQYQQQQQYQQQQQYEQQQYNQQQQYQQQQ
PYEQQQYHQQQQQIQQYSSNMNGVANHQSNEMQSSMSNRTPQPFSVQNQVPIPFLTPMSG
NNQEAMSQGEQIASRDERISTPAIKSGILQDTRNRFKGKPMFNFKQAPKVPPNPELMNLL
NRSDKKFDFESATEEDYLSLGAEACNFLQSPRVKHKTPPPVAPKPIINPNSPPWSPQPEL
ANQELPLHAENSVPAPATASEPESAPAPELDPTPVPAPEPSPPLAPQEVPANTPSPEKHT
WSPPGSQAEQQPQQAPAWGRNGPSPPQPHSQPEPQVSSKAPPQTQAQQQPQLQPPVSTWT
PAEMKPQAPAPSQSPPQLPWVTPQPPPPQPQAQPQPPINYWAAQPQWAQPQEQAQVQPPW
VQHQEQVQQQPQSHWVQPQEQVQQQPQPPWTQAQEQAQAQPPWVQPQEQVQQQPQPPWAQ
PQEQVQQQPQPPWTQPQEQAQAQPSWVQPQVQQQPQPPWAQPQEQVQQQPQPPWVQPQEH
VQQQPQPPWGQQPQPPQQAWPQAQAQPQPPWMSSPQPPMNAWTPPQSQAQPPQPPWAQSA
QPQPTAQPQPHMNTWSQAPAQAQAPAQAQAQAQLPINAWTPDQNQVQPQSHWAQTTPTQS
PSQQCWQQPPPQQTPPQPPMNAWAPAQAQPQTHTSTWAPQPQQAPVKTQTPMDRVAQPSP
KPGNAPQNAARSIPPPRPQRMNSYTLGERSSSPLINPMASVLVPVRGMGSALSMPAVTGK
GADLFAKRQSRMEKYVVDSDTVLAATAQAAQQAQAATAQENKARSTSPSPSVPHSWKYSP
NCRAPPTSNYNPIQSPSYPPGAIKQPPPSSPMAKAKKGKGKPACKPLAVIDVMKHQPYQL
NASLFTYGPAVEAAEAAKAAAPKPAPAPAPVPTNQNQNQPISYEQLSPVQPAGPMNSAYP
QQPQQPYGMPPQPHMHDSPYHQVPLNAYQPPNNPYQQAPAGPYQQPYNPLYQQAPPAPYL
PQHHPQPQAPNSSYQPTPQGPYQPAHSPPYQAAPQAPYQPLPPSTYVVPSFPIAAKPESI
SGGSTAPKPRFMAKKSSAQEFGRSYNLSPPDAKAPSLGLRSSSGSPFPSYKSLVQASSAQ
APPGKQTSWLDRSHKPPSPWEAAAHHPMGLVDEAFAFQNLQQAIAFNVRSAAQRKLLPEP
PAEWKARVSDDPPRKTEVWNTNQRWNKRQSWGQSQGQSQGQNQDQSRSYSRVMPPLLSST
KSIASAPAGPTGYRSLPRQWQPQRSLTETNIGPSGAIHGYGRPLVGQQQPSYRSVYHTNW
SWRR
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atgggcactggggattatatctgtgtaacggtgcgcggaggcgcgccctggggcttcagt
ctctgccaaggagagggggatgcctaccgacctttgcaggtttatcaggtggaagagggg
ggtcgtgcgtccctggccggggtttgtgagggggatgaggtggtgtcgatgaatggagaa
ccctgcggtgacctttccctcccagaagctattgctctcattgacgcctgcgtcaactgc
ctgcaattactggtcaaaagatgctgtgcactaacccccgaggcatttaattcagaggag
acctactttggcacaagggagtcctctggtgaggctttggaaagcaccaacctccgcatc
ctgtccctttgcaggtcccaaccacccagagagctctacatcgctgagtcccaggatgag
acctactatggggagacggagagtgacacggaggccgccagagggacccatctggtccgt
acccagctctgcggcccagagtcccagttactcggagggggagggtacggaggtcgagta
ggaccccagggagggagtttctccccaggggcaatggtggagctccagttgtccctctct
gaacacaccctggaggatcctgtctgcacctccctggggagtgctcttggaatagagggg
gagatccaggcgagagaggccctccagaacaaggccctcctccataccaccacccactcg
ctctacgtctgtggcccagctagggagcccctaagtcagcatggagtggtggagatcacc
ctgcagcatcccgcagccggaaggggttctccatgtctggtagagggggagggtgcctgt
ggggccagtggaaatgttggtggagcccccagggaggaaggagcagggcaaagccaggga
gctcctgcctccttcactgtctccttcggaattcccaaagagggtgccgagccggcagag
gagccagactcggattcggagaaggaccttgggaaacccaacaagcaccgggccaggcac
gccaggctcaggcgcagtgagagcctgtcagacaagcaggtgaaggaggccaagtctaaa
tgtaagcgcattgctattcttctgaacgctgacgctcccaaccccaacaacaagggggtg
ttgatgttcaagaggcatcaacagagggccaagaagtacacactcgtcagctacggcact
ggtgagagcgaaccagagtacgaggaagacgacagcgaggaagactacgaggaaaaagac
ccccgagcgatcaaatttaccctcttagccaccacaagcgattcagagcttgacgaggac
ttcattactaatgcccatggtggaggcagagtgataacctgcgactgggacacgggacta
ctcaatatcgagcgcaagctcaattccggagaggagatggagcaactgcccaacaccaca
ggcaagggggccacaatgttttcccagcgccgccagcgcatggacgagatcgctgccgaa
catgaggagatgaggcgccaggggattcctgtggagggagtgcaggaggtggagaagcat
gcagcctaccagcagatggaggagcgctcgtacatgcaggccaccacagagagccaggcc
tacatggacgtgaacatgcaccagaagcagcagcaacagtatcagcagttccaagaacag
cagtattacgagcagcaacagcagcagcagcagcaataccagcagcagcagcaataccag
cagcaacaacagtacgaacagcagcaatacaaccagcagcagcaataccagcagcaacaa
ccgtacgagcagcagcagtaccaccagcagcagcagcaaattcaacagtactcatctaac
atgaatggcgtcgccaaccaccaaagcaatgaaatgcagagttccatgagcaatcgaacc
ccccaacccttctcagtacaaaaccaggtgcccatcccatttcttaccccaatgagtggg
aacaaccaagaagcgatgagtcagggggagcagattgcctcacgcgacgagcgcatttca
acgccggctattaagtctgggatcttgcaggacacaaggaacagattcaagggcaagcca
atgttcaatttcaaacaggctcccaaagttccacccaacccggagcttatgaatctcctc
aacaggagtgacaagaagttcgatttcgagtcggctacggaagaggactaccttagcttg
ggggctgaggcttgcaacttcctccagtcaccaagggtcaaacataagacgcctccacca
gtcgctcccaagcccatcattaatcccaactctccgccttggtcccctcagcctgagctg
gccaaccaggagttgccactgcatgctgaaaatagtgtccccgcacctgctacagcctcc
gagccggagtccgcccctgctccagaactggatccaacccctgtaccggccccagaaccc
tccccccctcttgcaccccaggaagttcctgccaacaccccctctccagaaaaacacaca
tggagtcccccagggtcccaggcagagcagcagccccagcaagcgccagcctggggaaga
aatggaccttctccacctcagcctcattcacaacccgagcctcaagtgagttctaaggct
ccaccacaaacacaggcacaacagcagccacaactgcagccacccgtgagtacttggaca
cctgctgaaatgaagccccaagctccagctccaagtcagtccccaccacagctcccttgg
gtgactccccaacctcctcctcctcagcctcaagctcagcctcagccaccaattaattat
tgggctgcccagccccaatgggctcaacctcaagagcaagcacaggtccaaccaccatgg
gttcagcatcaagaacaagtacagcaacagccccagtcacattgggttcagcctcaagaa
caagttcagcaacagccccagccaccatggactcaggctcaagaacaagcacaggcccag
ccaccatgggttcaacctcaagaacaagtccagcaacagccccagccaccttgggctcag
cctcaagaacaagttcagcaacagccccagccaccatggactcagcctcaagaacaagca
caggcccagccatcatgggttcaacctcaagttcagcaacagccccagccaccatgggct
cagcctcaagaacaagttcagcaacagccccagccaccttgggttcagcctcaagaacat
gtacagcaacagccccagccaccatggggtcaacaacctcagcctccacaacaggcttgg
ccccaggcccaggcccagcctcagccaccttggatgtcatcacctcagcctccaatgaat
gcatggacaccaccacagagccaggcccagccaccacagccaccttgggcccaatcagcc
caaccccaacctacagctcagccccaaccccatatgaatacatggtcccaagcacctgct
caggctcaagcacctgctcaggctcaggctcaagcacagctacccattaatgcctggacc
ccagatcagaatcaggtccagccacagtcacattgggcccaaacaactccaacccaatcc
ccatcccagcaatgctggcaacagccacctccacagcagacacccccacagccacctatg
aatgcatgggccccggctcaggcacagcctcagacacacacaagtacctgggccccacaa
ccacagcaagccccagtaaaaacccagaccccgatggacagagtggctcaaccttctccg
aaacctgggaatgcgccacaaaatgctgcccgttctattcctccgcctcgcccacagcga
atgaattcttacacacttggagaaaggtcatcgtcacccctcatcaatccaatggccagc
gtgttggtaccagtgcgaggcatgggctcagctttgtcgatgccggctgttacagggaaa
ggagctgatttgttcgccaagaggcagtctcgtatggagaagtatgtagtggattcggac
actgtgctggcagccactgcacaggcagcccagcaagcccaggcagccactgcacaggaa
aacaaggcaaggtccacatcgccctctccctccgtacctcattcgtggaaatattcaccc
aattgcagagctccccctacatcaaattacaaccccatacaatccccatcctacccacca
ggggccattaagcaaccccctccatctagccctatggccaaagccaagaaagggaaaggc
aaacctgcctgcaaaccccttgctgttatagatgtcatgaaacatcagccgtatcagctc
aatgcctccctttttacatatggcccagcagtggaggctgccgaggctgccaaggccgct
gcaccaaagcctgcaccagcccctgccccagtccctacaaaccaaaaccaaaaccaacca
atcagttatgagcaactttcccctgtccagccggctggaccaatgaattctgcctatcca
cagcagccccagcagccctatgggatgccccctcaaccacacatgcacgatagtccctac
caccaagtcccacttaatgcttaccagccacctaataacccctaccagcaagctcctgct
ggcccttaccaacaaccatataatcccctttaccaacaagcccctccagccccttatcta
ccccagcaccatccccagccccaagctccaaactcttcctaccaaccgaccccccaaggt
ccatatcagccagcccatagccccccttaccaagcagcaccccaagccccctaccagcca
ctacctcccagtacctatgtggtccccagctttccgatagcggcaaagcctgagtccatc
tctgggggcagcaccgctccaaagcccaggttcatggccaaaaagagttcagcccaggag
tttggccggagctacaatctgtccccacccgacgccaaagcaccatcgctgggcctccgg
tcatcatctggatccccctttccctcatacaaatccctggtacaggcctcgtctgctcag
gcccccccggggaagcagacgtcatggctggacaggagtcacaagcctccttccccctgg
gaggccgcagctcaccaccccatgggcctggttgacgaggccttcgccttccagaacctc
cagcaggccatcgccttcaacgttcgctcggctgcccagcgcaaactcctccctgagccc
cctgccgagtggaaggctagggtgtctgacgaccctcccaggaagactgaggtatggaac
acgaaccaaagatggaacaagagacagagctggggtcagagccagggtcagagccagggt
cagaaccaggatcagagtcggagttacagcagagttatgcctccgttactgtcctcgacc
aagagcatagcctcggcccccgctggtccgactggttacaggtccctgcccagacagtgg
cagccacagaggtccctgacggagaccaacatcgggccctctggggctattcatgggtac
ggaaggccccttgtgggccagcagcagccgagctacagatctgtgtaccacactaactgg
agctggagacgctag
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integrated database retrieval system
