Oncorhynchus masou masou (cherry salmon): 135510632
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Entry
135510632 CDS
T10723
Symbol
focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135510632 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135510632
NCBI-ProteinID:
XP_064787778
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Position
23:complement(26128091..26221168)
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AA seq
1815 aa
AA seq
DB search
MSENLKKRFDFPSPLIQAQTVRSLVAAVLKEKGQNERIGQSSTQGPAMEALWEQCCSDCA
AVRSACCDAVVLLVEQAHADLHYILNSVLNLLPSARNVQGLIKVIGRLLQVQADQRDKGT
PFTCPYSIRSSPHPYIIVLENRPDCWPVLLLEIDDFIQRAADRGESAYVTMLAPFLRYLY
CEPQRLPEYALLRHSLLRVLLPPQPGDHNQEKKKDQETEEDPGQSPVVCHSLVRCLYELV
PHMQVDSVEAVLELRGLVEAMIPALEVADWGSERAQLALQLLCACQLSLKLSGDCRPLLQ
LLHQLLPTRTEEFPVEDMMVGLALLLLEASASQQTGLLTLALSLAPPECERPPWGTPVLV
LPLLQVLSCSSLMEPLTDSRTHTRNQSLAQSLLQNAQRESSKPAEKVSQLALPLSPWSSE
LLVATQVLRQVTGDPVAASEWLLAVTSALPLSQRVPSPLTLTVAHLVVTGQQDVCRLALK
TAAAIAQADPAQVPSLLHVLLFKLGKECDPDLSHAVLYSLPNFGTHKLCLPQVLHTLQML
GSAPKLRAVALRLMTALWEKQDRVYPDLQRLISQFEKSVLLGKEAQWEQILARAACVRDI
CRERPYQHGGDMLAAITHTLAQCSRPDQAAPAALALQGLHELCRTEVVDVGSTWTALGPK
LSCDSRPLVVKAIAELLALLPQLTVKTEEYEKLKEQVVSFLWGYALNKEPEVASCGYKAL
SEFSEAAHTLLHLPEQARPVAKLPESVEEEQVKEKEEEEEEEEDLSIPGPSYVKLLGLTS
LSVLPAFELFLTSLVKQEMSQMPRGVYHSALKRGSLRSDQGKTVAGIPGFMLKTYEKSKQ
PGLKPGLAAGLLLSFDLPVQTDRDGRPINRFLLSRGRSYQQMLATLIHEVNIQPSEWHRA
LLLPQAWRGFMSRAYHAVLQGRRAELEMQQKQGKESPEELQYKQHCAWLWVRDQLTDVVK
SAAKDSPVVQGNSILALSGLASVLAKYESNMPADTEGGLGVGPEILSTSTWLAMVLDTLL
SIVSSSYKPRGQVFPWFLHRSYSGENTASAIARSCAALALSLVVPVLVAWHKDSVPQVLA
TLRAGLPGSPTADDSQAVQFHSGLALGMLLSCLHQERLSDVSGQKITELLMSSLDTLEAC
CFDSNLEYNAGCVLGLGLVLGALSGSGQTEHRARVGLTLDKLLEALQGDSSSQGRMMQEV
LAYSVAGVGVAAFSGGVVDALKSEEIMSTLRSMTEESQQTPGFSLALGLVVHGLSSCGHG
KAEDIQPRLLDAWIKILLAEGCPTMQRLAAVNGLVALVGSETGILQLKNESEQSSQQQSR
MNEVIRAITQIITFSGAIGLQSNSACLVGHLHLAHMSTSHSRTAVPQDFSYLPEKSVIRS
AVDFLTEAGKKGPEFAHPSLVKTALASLATVGGSYQYPPVNWSAILSPLMRLNFGEVVQH
QCIELASNQAQSSQSASLFLGVWLSPPLVHSLSMWTRGHLYDNLSVWMKHVSEDKLQVYL
ETLGLQQFQQDVRPQRLAICLSLLRGLAQAMALPNPPNTVWAVLCTTIEKIFNILPNHIQ
DQEVHLYVGVSKCLSELADTEIDRIAQVTEEQMEKTSFILAHLTSQGRVPLLGLNDVIAA
VLRGWSSHKVGWLLLQTFYQCRLAASPNTGVSKRMEWLLELMGLIRNVAYGATAVKCGDT
RQATDFLLQVFAAAVISWGDHTMPLLLGVRTQWFPWQQGSEPPGLPHALYGDAVLAEQSV
SLCLLGLPHSLRQLLAKEPWREQSQKFIDWLFSITEGPETGLSETSINTAKAALLALKSS
TDFKKKAVWTRAYGW
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagaatttgaaaaagagatttgactttcccagcccgctcatacaggcccagacg
gtgaggagtctggttgcggctgtgctgaaagagaagggccagaatgagaggatcggccag
tcctccacccagggcccagctatggaggccctgtgggagcagtgctgcagtgactgtgct
gctgtgcgctcagcctgctgtgacgccgtggtgctcctggtagagcaggcccacgctgac
ctgcactacatactcaacagcgtcctcaacctcctgccttccgccaggaatgtgcagggg
ttgataaaagtgataggaaggcttctccaggtgcaagcggaccagcgagacaaaggaacg
cccttcacttgtccctactccatcaggagcagcccccatccatacatcatcgtcttggag
aaccgtcctgactgctggcccgttctgctgctggagattgacgacttcatccagcgggcc
gctgacaggggtgagtctgcgtacgtgaccatgttggcccccttcctgcgctacctgtac
tgtgagccccaacggctgccagagtacgctctgctcagacacagcctcctcagggtccta
ctgcccccccagccgggggatcacaaccaagaaaagaagaaagaccaggaaactgaagag
gatccgggacagagccctgtggtatgccacagcctggttcgctgtctctacgagctagtt
cctcacatgcaggtggacagtgtggaggcagtgttggagctgcggggcctcgtggaggcc
atgatcccggctctggaggtggccgactgggggagtgagagggcccagctggccctgcag
ctgctgtgtgcctgtcagctaagtctgaagcttagcggagactgcagaccactactccaa
ctactgcaccagctcctccccacccgcacagaggagttccctgtggaggacatgatggtg
ggcttggctctgctccttctcgaggcctcagcgtcccagcagaccgggctgcttacactg
gccctaagtctggcccccccagagtgtgagcgacccccctggggtaccccggtgctggtg
ctgcctctcctgcaggtcctctcctgctcatccctcatggagcccctgacggactcccgc
acacacacacgcaaccagagcctggcccagagcctcctacagaatgcgcagagagagtcc
tccaagcctgctgagaaggtgtcccagttagccttacccctcagcccgtggtccagtgag
ttgctggtggccacccaggtcctacgccaggtgacaggggacccggtggcggctagcgag
tggctcttggcggtgacctcggccctgcccctgagccagcgcgtcccgtctcccctcacc
cttaccgtggctcacctggtggtcaccggtcagcaggacgtctgcagactggccctgaaa
accgcagctgccatcgcccaggcagaccccgcacaggtcccatcccttcttcatgttctg
ttgtttaagctggggaaggagtgtgacccagacttgtcccacgctgtgctgtactcgctg
ccaaactttgggacccacaagttgtgtcttccccaggtgctccacactctccagatgctg
ggcagcgcccccaagctgagggccgtggcactgcgcctcatgaccgctctgtgggagaaa
caggaccgtgtgtaccctgacctccagaggctgatctcccagttcgagaagtctgtgctc
ctggggaaggaggcccagtgggaacagattctagccagggctgcctgtgtcagagacatt
tgcagagagaggccctaccagcacggaggggacatgctggctgccatcacacacactctg
gcccagtgttccagaccagaccaggccgcccctgctgccttggccctgcaaggtctacac
gaactctgccgcaccgaggtggtggatgtgggctccacatggacagccttgggccctaag
ctgagctgtgactctagacctctggtggtcaaggccatagcagagctcctggctctgcta
ccacagctcactgtcaagacagaggagtacgagaaactcaaagagcaggttgtcagcttt
ctctggggctacgctctcaacaaggaacctgaggtggccagttgtggatacaaggctctg
tcagaattctcagaggcagcgcacacgctccttcacctccccgagcaggccaggccagtc
gcaaaacttcctgaaagtgtggaggaggaacaggtaaaggagaaagaggaggaggaggag
gaggaggaagatttgtccattccaggtccatcctatgtgaagctcctaggtctcacatcc
ctctcagtcctgccagcatttgagctcttcctgacctcactggtgaagcaggagatgagc
cagatgccccgtggggtgtaccactctgccctgaaaagggggagcctccggtcagaccag
gggaaaacggtggcagggatcccaggcttcatgctgaaaacctatgagaagagcaaacag
cctggtctcaaacctggcctggcagctggcctccttctctcctttgacttacccgtccag
accgaccgagatggacgaccaatcaaccgcttcctcctcagcagggggcggagctaccag
cagatgttagccactctcattcacgaggtgaacattcagccatcagagtggcatcgggcc
ctcctcctaccccaggcctggcgagggttcatgagccgagcgtaccatgccgtcctacag
ggccgtcgggcagagctggagatgcagcagaagcaaggcaaggagagtccagaggagctg
cagtacaaacagcactgtgcctggctctgggtcagggaccagctgactgatgttgtcaaa
tctgcagcaaaggacagtccggtggtgcaggggaactccatcttggctctgagcggtctg
gcttcggtgctggccaaatacgagagcaacatgcccgcagacacggagggaggacttggg
gtgggccctgagatcctgtccacatccacctggctggccatggtcctggacactctcctc
agcatcgtcagcagcagctacaagcccagaggacaagtcttcccctggttcctacaccgg
tcctactcgggagagaacacggccagtgccatcgcccgctcctgtgccgccctggccctg
tccctggtggtgcccgtgctggttgcctggcacaaggacagcgtgccacaggtcctagcc
accctgagggcggggcttcccggctcgcccaccgcagacgactcccaggccgtccagttc
cactctggcctggccctgggcatgctgctgtcctgcctgcaccaggagaggctcagtgat
gtgtcaggtcagaagatcacagagctgttgatgagttctctagacactctggaagcctgc
tgctttgacagcaacctggagtacaatgcgggctgtgtgctgggactaggcctggtgctg
ggggctcttagtggcagtggacagacagaacaccgcgcccgtgtgggcctcaccctggac
aagctgctggaggccctacagggggacagcagcagtcagggtcgcatgatgcaggaggtg
ttggcctactctgtagcaggtgtgggggtggcagccttcagtggaggggtagttgatgcc
cttaaatcagaggagattatgagcactctccgtagcatgacagaggagagccagcagact
ccaggtttctcattggctcttggcctggttgttcatggtctgtcatcctgcggccacggc
aaggcagaggacatccaaccccgccttctggatgcctggatcaagatcctactggctgag
ggctgtcccaccatgcagaggctggctgctgtcaacggcctggtggctctggtgggatca
gagactggcatccttcagctgaagaatgaatctgagcagtcctcccagcagcagtccaga
atgaacgaggtcatacgggccatcacacagatcatcacattctcaggggccatcgggctg
cagtctaacagtgcctgtctggtggggcacctccacctggcccacatgtccaccagccac
agccgcacagcagtgccccaggacttcagttacctcccagagaagagtgtgatcaggtct
gctgtggacttcctcaccgaggcaggaaagaaaggtccagagtttgcccaccctagcctg
gtgaagacagccctggcctccctggccacagtgggagggagttaccagtacccccctgtc
aactggagcgccatcctgtcccctctcatgaggctcaactttggtgaggtggtccaacac
caatgtatagagctggcatccaaccaagcccagtcttcccagagtgcatctctcttcctg
ggggtgtggctgagccctcccctggtccacagtcttagtatgtggacgcgaggtcacctg
tacgacaatctctctgtatggatgaagcacgtgtcggaggacaagcttcaggtttacttg
gagaccctgggtctgcagcagttccagcaggatgtccggccccagcgcctggccatctgt
ttgtccctcctccggggcctggcacaggccatggccctccccaacccgcccaacaccgtc
tgggccgtcctgtgtactactatagagaagatcttcaacatactccccaaccacatacag
gaccaagaggtgcacctgtacgtgggagtctccaaatgtctgtccgagttggctgacaca
gagatcgaccgcatcgcccaagtcacagaggaacagatggagaagaccagcttcatcctg
gctcacctcacctctcagggccgagtgccactcctgggccttaacgatgtcatcgcggcc
gtgctccggggttggtccagccacaaggtgggctggctcctcctgcagactttctaccaa
tgccgtctggccgccagccccaacacaggtgtgtccaaacgaatggagtggcttttggag
ctgatgggactcataagaaatgttgcttacggagcgaccgctgtcaagtgtggagacacc
aggcaggccactgacttcctgctccaggtattcgctgcggcggtgatctcctggggcgac
cacaccatgcccctccttctgggcgttaggacccagtggtttccatggcagcaggggtca
gagccgcccggtctacctcacgctctctacggtgacgccgtgctggccgagcagtcagtc
tcactatgcctgttgggattgccccacagcctgaggcagctattggctaaagagccctgg
agggaacagtcacagaagttcatagattggcttttcagcatcactgaaggtccggaaact
ggtctgtcagagacttccatcaacactgccaaagctgccttgctggctttgaagtcctcc
acggatttcaagaaaaaagcggtgtggacgcgagcgtacggttggtga
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