Oncorhynchus masou masou (cherry salmon): 135511038
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Entry
135511038 CDS
T10723
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135511038 (col17a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
135511038
NCBI-ProteinID:
XP_064788572
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All DBs
Position
23:52931247..52955259
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AA seq
1668 aa
AA seq
DB search
MDDLTTRKRNHSGGSSGAKDVKCLDESNYLQSVVTETTTSTSRLISLPPKGGSGSKSSTH
RTMSSNAGGLWLEKNILTQNSSGTNFSSSSVGVNAGGSSSSSGFYMGDYSEGGGDGGGGG
GGGGGGGGGGGGGGGGGVGSGGGGGGGSGYGGVYGGSPGSKVKSSSSGCSRRAQSSASPG
GLSPGFLERKSMASRSGGYDGSSSGNSSPEFTRKDYAGSGATRIGRSQSRESEIRARLQS
ASPSAGRWTELDDVKRLVKGGRSNSVSPTRSSASSTLPVPRKATVEAKIVTQASQSVSGQ
YETTTLDSGLPSSYCWTSSTLPISSATGNSSSAYGYHSNTNNMSPGLGSSLLNTTSPSSL
SVYGFQNNLAPTSSSVLTTSGVNAHSGTLTGYGVQKNISNGCGLVSTGVSTSAMSALRSH
TDDAYRKDLKYLVLQKENVPVKRDTEVLTLTKDSGKHFTSSVRSVGGSLSGDSLKKEKMV
SSYSETAPVLLKSESNSYYGSPLVSTKDKATYAEIQKEGDYYSSGGRGGGCCGCEDSCCS
WWKWLLGLLLLSLLLLGLLFGLIALAEDVRNLKSRVAALESTSTAAHASRLSASNNDIHN
PQSGTYMDTGGAARSDNTLNLDTSLGMGMGTGTGTGIAGHTDNAALQRTILQLLRAEMQS
QSFRALLTSSTKGDRGEPGTKGDAGNHGTKGDNGFPGLPGPPGAIGHPGHEGPKGQKGSQ
GDHGAEGPQGLRGREGPGGPRGEPGPSGFGEKGDKGSPGESGSLGLAGPVGPAGPKGSGG
APGTPGTPGQPGSQGFRGESGLPGPKGERGPAGFQGIKGDHGEKGPRGAAGDPGLSGLPG
PAGEKGPKGSAGTPGIDGDKGQRGDHGPTGLPGIRGPSGPAGDSGLPGTPGLQGPPGIPG
NPGQPGAKGEAGEPGRIINAGGSSSVAIPGPPGSPGAPGQAGPPGLSGPIGPAGLPGQSG
PKGERGLKGEMGIQGLQGEAGISVKTSETVSSSRAERQFSLPAQPGPPGPPGPPGAPGRA
GDSRSGLPGPAGPPGEPGYGRPGPRGEKGESGSFVPNSGTFFSGPPGPPGPSGPKGSPGT
PGPRGNQGDSGQPGLPGSPGRPGGGSERASPYGGTHGPPGPPGTPGIPGPEGRKGEPGIP
GSPGLPGSARGTVAASPGFPGPPGPPGPPGHPGIPGIASAPPDLRQYVNDYLRINARSMS
SGLPGPRGLPGPPGAPGSSGSSSSVEDISSRVIAYLQRSGSGFGGGAQGPPGPPGLPGSS
GSGSGSMSVNDLIVMLQRDDVRRYVMGPPGPPGPAGPLARGGSTANYDPQEVATYVFRIM
NERGIGGGQPGPPGATGPPGLPGSFSGVSDISALLQNSQFRAMVGRSAGAPGPPGTPGIP
GPPGTPGTPGGPSYRSSASGGLRIEDVQHYLQSSGYSGPPGPPGPPGPQGPPGNSHGVVS
YGDSRNIGNYQRESIRTELQAYLSSDGIRHSFIGQPGPPGSQGPRGHKGDPGEPGGVQTN
RQSYAQSDPRYSSDLERRQSDIGRLTEPLDYSNVALRVTDYIKNQGLLQDILSEGHQRGG
SWESQGLPGPPGPPGPPGYSRVIGAYGNVTADLMDFFRTHGTIVGPPGNTGPKGDRGYLG
PKGDRGEMGRPGPPGLQGLHGQDGYRGEKGEKGAGEVRVGRRRRSIGV
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaacaacaagaaagagaaaccactcaggaggaagctccggggcaaaggat
gtgaaatgtctggatgaaagcaattatctccagtcagttgtgacagaaactacaacctcg
acaagtagattgatatctttacctccaaaggggggcagtggatcaaaaagtagtacccac
aggactatgtccagcaatgctggaggcctgtggttggaaaagaacattttaacccagaac
agcagtggaactaacttttcctcatcttctgtgggtgtcaatgccggaggatccagctcc
tcatcagggttctacatgggggactactctgagggtggtggagatggtggagggggaggt
ggtggagggggaggtggtggaggtgggggaggtggaggaggcggcggaggtgttggcagt
ggaggtgggggtgggggtggctcaggctatggaggagtgtatggaggaagccccgggtca
aaagtaaagagcagctcgtcagggtgctccaggagagcccagagctctgcctcgcctggg
ggtctctcccctggcttcctggaaaggaagagtatggccagtcgctcaggaggctacgac
ggaagctcaagtggcaactcctcccccgagtttacacggaaagactatgcagggtcaggt
gccactagaatagggaggagccagagcagagagagtgaaatcagagccagactgcagagt
gcctctcctagtgctggcagatggactgagctggatgatgtgaagaggctggtgaaggga
ggacgctccaacagtgtcagccccacccgctcctctgcttcctccaccctgcctgtcccc
aggaaggccaccgtcgaggccaagatcgtcacccaggcctcccagtcagtctctgggcag
tatgagaccactaccctggactctggcctaccttcttcctactgctggactagctctacg
ctgcccatctcctctgccactggcaacagcagcagcgcatatggttaccatagtaacaca
aacaacatgtctccaggcttggggtcctccctgctcaacaccacctcaccctcctccttg
tcagtgtatggattccagaataacttggcgcccacatccagtagtgtcctcaccaccagt
ggagttaacgcacattcaggcactttgacaggatatggagtgcagaagaacatatcaaat
ggttgtggtcttgtcagcaccggagtgtcaacctctgcaatgtccgctttgaggtctcac
actgatgacgcatacaggaaagacttaaagtaccttgtgctgcagaaggagaatgttcca
gtcaagagagatactgaggtgctcaccctcacaaaagacagtggaaaacacttcactagc
agtgttcgcagtgttgggggttcactgtctggtgattctctaaagaaggagaagatggtg
tccagctacagtgagactgcaccagtccttctgaagtctgagtccaattcatactatgga
tcacccctagtgtcaacaaaagacaaagcgacatatgcagagatccaaaaagagggggac
tactacagcagtggaggacgaggtgggggctgctgtgggtgtgaggactcctgctgttcc
tggtggaagtggctgctaggactgctcctgctctccctgctgctcctgggcctgctcttc
gggctcattgccctggcggaggacgtgaggaatctgaagtctcgagtggcagctctggag
tccacctccaccgctgctcatgccagccgcctgtcagcctccaataacgacatccacaac
ccccagtctggcacctacatggacactgggggcgcggcccgctccgacaacaccctgaac
ctggataccagcctgggcatggggatgggcactggcacgggcactggcatcgccgggcac
acagacaatgctgccctccagaggaccatcctgcaactactgagagctgagatgcagtct
cagtcattcagagcccttcttacctcttcaacgaaaggggacagaggagagccgggaact
aaaggcgatgcagggaatcatggaactaaaggtgacaatggtttcccaggactgccaggt
cctccaggtgccattggtcacccaggacacgaaggacccaaaggacaaaaaggaagtcaa
ggtgaccatggagctgaggggccacaagggctcaggggccgagaggggcctggagggccc
agaggggagccaggaccctcagggtttggagagaagggggataaaggttctcctggtgaa
tcaggatctcttggtcttgctggtccagtcggcccggctgggcccaaaggctcagggggg
gctccgggtactcctggtacgccaggccaaccaggatctcaaggcttccgtggagaatca
ggactacctggtccgaagggggagaggggtcctgctggatttcagggaatcaaaggtgac
catggtgagaaaggacctcgtggtgccgcaggtgacccaggactatcaggcttgccagga
ccagccggagagaaaggacccaaaggatctgcaggaactcctggaattgatggtgacaaa
ggccaaagaggtgatcacggtcctactgggttaccagggatcagaggtccatctgggcct
gcaggggactcaggcctaccaggaacacctgggcttcaagggccaccaggaataccaggg
aaccctggacaaccaggagccaagggtgaggcaggagaaccaggaagaatcatcaatgca
gggggatccagttctgtggccatccccggccccccaggaagccccggagcacccggtcaa
gccggacccccagggttatcaggccccattggccctgctggtcttcctggccagtctggt
cctaaaggtgagagagggctgaagggtgagatgggtattcagggactccagggagaggca
ggtatctcagtgaaaaccagtgaaaccgtcagctcatccagagctgagagacaattcagt
cttcctgcacaaccaggtccccctggtccccctggaccccctggagcccctggacgtgca
ggtgactcaagatcaggactcccaggaccagctggtcccccaggagagccaggatatggc
agacctggtcctagaggagagaaaggagagtcaggaagctttgtacccaattcaggaaca
ttcttctctggaccccctggaccacccgggccatctgggccaaaaggatcacctggtaca
ccaggaccaagaggaaaccaaggagattcaggccagcctggtctaccagggagcccagga
agacctggaggaggctctgaaagagcatcaccatacggtggaacacatgggccacctggg
cccccagggactccagggattcctggaccagagggacggaaaggcgaacctggaattccc
ggttctcctggtcttcctggctccgcaagaggcactgtggcggccagcccagggttccca
ggtcctcctggtccaccgggtcctcccggacacccaggcattccaggcatagcctctgct
cctcctgatctgcgtcagtatgtcaacgactatctccgaattaatgctagaagtatgtcc
tctggtcttcctggcccccgtggcctccctggacccccaggagcccctggatcgtctgga
tcctctagttctgtggaggacatatcttctcgtgtcattgcttatctgcagcgttcagga
tcaggcttcggcggtggtgctcagggtcctccaggccccccgggacttcctgggtcctct
ggctctggttctggctcaatgtctgttaacgacctcattgttatgctacagagggatgac
gtacggcgatatgtaatgggcccacccggacctccaggcccagcaggaccattagccaga
ggaggcagtacggcaaactacgacccacaggaagtggctacctacgtcttcagaatcatg
aacgaacgcgggatcggtggtgggcagcctggacctccgggtgcaaccgggcctccaggg
ctacctggctccttcagcggtgttagtgacatctccgcactcctgcaaaattcacaattc
cgtgcgatggttgggcgctctgctggagcccctggtcctcctggtaccccaggtatcccg
ggacccccaggcacccctggtaccccaggagggccatcttacaggagctcagcctcaggg
ggtttaaggatagaggacgtccagcattacctacaaagttctgggtacagtggtcctcca
ggcccacccggccccccaggacctcaggggcccccagggaactctcacggagtagtctcc
tatggagatagtagaaacatcggaaactaccagcgagaaagcatccgcacagaactccag
gcgtacctcagcagtgacggtatacggcactccttcattggccaaccaggtcctcctggg
tctcagggtccccgtggtcacaaaggagaccctggagaacctggtggggttcagactaac
cgtcagagttatgcccagagtgacccacgttactcttctgaccttgagcggcgccagagt
gacattgggagattgacagagccactagactactccaacgttgccttgagagtgacagac
tacatcaagaaccagggcttactgcaggacatcctgtctgagggtcaccagcgaggagga
tcctgggagtcccaaggcctcccaggaccccctggacctcctggacctcccgggtatagc
cgtgtcattggggcttacggcaacgtgactgctgacctcatggacttctttagaacccac
ggcaccattgttggccccccagggaatactggcccgaaaggagacagggggtacctcgga
cccaaaggagacagaggcgagatgggtcgcccaggccctccaggactgcaggggctacat
ggtcaggatggatacagaggagagaagggagagaaaggtgcaggtgaagttagggttggt
cgtcggcgtcggagcatcggtgtttaa
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