Oncorhynchus masou masou (cherry salmon): 135511115
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Entry
135511115 CDS
T10723
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial-like isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135511115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135511115
03016 Transfer RNA biogenesis [BR:
omm03016
]
135511115
Enzymes [BR:
omm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
135511115
Messenger RNA biogenesis [BR:
omm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
135511115
Transfer RNA biogenesis [BR:
omm03016
]
Prokaryotic type
tRNA degradation factors
135511115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
135511115
NCBI-ProteinID:
XP_064788734
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All DBs
Position
23:complement(58608157..58631342)
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AA seq
770 aa
AA seq
DB search
MKHLLRLGPTLARLNVRLCHQSVWNSHGTIQKVGVNLGEKKLEISTGKLARFADGSAVVQ
LGETTVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNHLRRELGTTENEILTSRLI
DRAIRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINGASAALTLSDIPWNGPIGAVRIG
LVDGEFLVNPTRKQMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAVKVGVKHTQQ
IILAIQQMAREAKVTKRTPPKIFSAPEEMIEHTRQFASEKVYAVFTDFTHDKISRDDAIN
KVRLETEEQIKEKYPHAEPYEVMESFNMVSKEVFRNLVLNEYRRCDGRNLTSLRNISCEA
DIFKPLHGSALFQRGQTQVLCSVTFDSLESSIKTDIITTALSGVKDKNFMLHYEFPPYAT
NEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRVTSEVLESNGSSSMASACGGSLA
LMDAGVPITSAVAGVAIGLISKANPEKPSEIQDYRILTDILGIEDYLGDMDFKLAGTNKG
INALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNNTIAKPRANRKENGPVVENVRVP
VSRRARFVGPGGYNLRRLQAQTGVTISQVDEEIFSVFAPTPGAMNEAQEFITEICKDDQE
QQLEFGAVYTATIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSAIGLEVGQQIQV
KYFGRDPTDGRMRLSRKVLQSPAATVVKTLSEKQSITMGTGNGQATSNSS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatttactgaggcttgggcccacgctggccagactaaatgtgcggttgtgccac
caaagtgtctggaacagccatggaacgatacaaaaagtgggtgtgaacttgggtgagaaa
aaacttgagatctcaacagggaaacttgccagatttgcagatgggtcagctgttgtgcag
cttggggaaacaacagtgatggtgacagctgtcagcaaaacaaaaccgtccccctcccaa
tttatgccactagtggtggactacagacagaaagcagctgctgctggtagaatccccact
aaccacttgcggcgggagttgggcaccactgaaaatgagattctgactagtaggctaata
gacagggcaatcagacccctttttcctgctggttatttctatgacactcaggtcctgtgt
aacctgttggcagttgatggtgttaatgatccagatgtactggctatcaatggagcctct
gctgcccttaccctttctgacattccctggaatgggcccattggtgcagtgcgcattggc
ctggtggatggcgagttcctggtgaacccaacacgaaagcaaatggcttccagcactatc
aatctgatagtggctggagcacctctcagccaagtggtgatgatcgaggcatctgctgag
aatgtgttgcagcaggacttctgtcatgcagtcaaggttggcgtgaagcacacacagcag
atcatattggctattcagcagatggccagagaagcgaaagtgaccaagcgcacccctccc
aaaatattttctgcgcctgaggaaatgattgagcacacacgacaatttgcctccgaaaag
gtctatgctgttttcacagacttcactcatgacaagatttccagagatgacgccattaac
aaagtgcgactagaaacagaggaacaaataaaagagaaatatcctcatgcagaaccttat
gaggtgatggaatccttcaacatggtgtccaaagaggtcttccgcaatctggttttgaat
gaatataggaggtgtgatggaagaaacctgacttcattaagaaatatttcctgtgaggca
gacatctttaagccccttcatgggtctgcacttttccagaggggacagacacaggttctg
tgctctgtaacatttgactccttggagtccagtattaaaacagacatcattactacagca
ttaagtggagtcaaagacaagaatttcatgcttcactatgagtttcctccttacgcaacc
aatgagattggaaagatgagtggaatgaacagaagagagcttggtcatggggcactggcg
gagaagtctttgagacctgtcatcccaaaagacttccccttcactattagagttacctct
gaggttttggagtctaatggttcctcgtcgatggcgtcagcatgtggaggcagtttggct
ttgatggatgctggtgtgcctattacatcagctgtggcaggtgtagctattggactcatc
tccaaggcaaacccagagaagccatcggaaatccaggactaccgaatactgactgatatt
ctgggaatcgaggattacctaggagacatggacttcaaattggctggaacaaataagggt
atcaatgccttacaggctgatgtgaagattccaggcttacctctgaaacttgtaatggag
gctattcagcaagccacagttgccaagagggagattttgggcatcatgaacaataccatt
gccaagcccagggctaacagaaaggagaatggtccggttgtcgaaaatgtcagagtccca
gtctccagacgagcacgatttgttgggccagggggctataacctccgcagactacaagct
caaacaggtgtgacgataagccaggtggatgaggagatcttctctgtgtttgcacctact
cctggtgccatgaatgaagcccaggagttcatcacagaaatctgcaaagatgatcaagag
cagcagctggagtttggtgctgtttacactgccaccatcatggaaataagggacattggt
gtcatggtgaagctgtatcccaatatgagtgctgttctgctccataactctcagctggac
cataaacggataaaacacccaagtgctattggattagaggttggacagcagattcaggtt
aaatactttgggcgagacccaacagatggaagaatgaggctttcaaggaaagtgttacaa
tctccagcagcaacagttgttaagacactgagtgagaaacagagcatcaccatgggcaca
gggaatggccaagcaaccagcaactcgtcttga
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