Oncorhynchus masou masou (cherry salmon): 135512011
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Entry
135512011 CDS
T10723
Name
(RefSeq) X-ray repair cross-complementing protein 5-like
KO
K10884
ATP-dependent DNA helicase 2 subunit 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
135512011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135512011
03400 DNA repair and recombination proteins [BR:
omm03400
]
135512011
Spliceosome [BR:
omm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
135512011
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
135512011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_C
SAP
VWA
SAP_new25
Rho_N
Motif
Other DBs
NCBI-GeneID:
135512011
NCBI-ProteinID:
XP_064789656
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All DBs
Position
24:complement(29168310..29173717)
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AA seq
609 aa
AA seq
DB search
MAQWNDYHHEDEDVDGEERDESGVDYKSTGRDSLVFLVDASKEMFIKGKDEEPSPFDMTM
QCVRSVYTSKIISSDKDLVALVFYGTEQSKNPRNSFKHVYIYHDLDLPGARRVQDVDGLR
GEKGAQVAGETMGSGNTNLGEALWCCSNLYSDIKLRLSHKRLMIFTCRDTPHGGDSERDR
QARTKASDLKETGVVIDLMHLMKPGGFDVSLFFCDVVSPPEDEAELGLQMKPCGKLEDLQ
KRVRAKEMKKRSVARLNLCLGEGMNVAVGVYITALQARKPNAIKLYRDNNEPVRTKTRLY
HTQTGSLLLPSDTKRVQVYAGRQIVMEKDEVDVIKKFSDPGLELIGFKPMERLKLHHHLR
SAVFIYPEEEMVTGSACVFTALLRRCSVRKVFALCKYTRIRNSPPRFLALVPQREEVDDG
QAQIAAPGFHGIFLPYADDIRTLDTPQLPTASESQVDKMKEIVHKLRFKYRSDAFENPVL
QQHYRNLEALALDLMAPEHIEDLTMPNVNMMDQRLGSLAQEFRDLVYPADYNPEGKTAPK
RKPAEAAGGTEKKPKVEMSEDELRGHVQKGNLGKLTVPVLKDACKQFGVKVTGTKKQELI
DALTAQLTK
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcacagtggaacgactaccaccatgaggatgaagatgtggatggagaggaaagggat
gagtctggagtggactataagagcacaggccgtgacagcctggtgtttctggtggatgct
tccaaggagatgttcatcaaggggaaggatgaagagccctcgccatttgacatgaccatg
cagtgtgtccgcagcgtctacaccagtaaaataatcagcagtgacaaggacctggtggct
ctagtgttctatgggacggaacagagcaagaaccccaggaacagtttcaaacatgtctat
atctaccacgacctggacttacctggtgcccgtcgggtgcaggatgtggatgggctgcgt
ggggagaaaggtgcccaggtggcaggagagacaatgggcagtgggaataccaacctgggt
gaggcgctgtggtgctgctccaacctctacagtgacatcaagcttcggctctcccacaaa
cgcctcatgatcttcacctgccgagacacaccacatgggggagacagcgagcgcgaccgc
caggcccgcacaaaggctagcgacctcaaagagaccggtgtggtgatagaccttatgcat
ctgatgaagccaggtgggtttgacgtctcgctcttcttctgtgacgtggtgagcccccct
gaggacgaggctgagctaggcctgcagatgaagccttgtgggaaattggaggacctccag
aagagggtcagagccaaggagatgaagaagagatcggtcgcaaggttgaatctgtgtctg
ggggaagggatgaacgtggcagtgggtgtgtacatcacggccctacaggccaggaagcct
aacgccatcaagctctacagagacaacaacgagcccgtccgcaccaagacacgcctctac
cacacacagacgggcagtctgctgctccccagtgacaccaagagggttcaggtgtatgca
ggcaggcagatagtgatggagaaagacgaggtggatgtgataaagaagttttctgacccg
ggtctggagctgattgggttcaagcccatggagcgtctcaaactgcaccaccacctcaga
tctgctgtcttcatctacccagaggaggaaatggtcacagggagtgcctgtgtgttcaca
gcgttgctgcgcaggtgtagtgtgaggaaagtgtttgctctgtgtaaatatacacggatt
cgtaactctccaccgcgcttcttagcgctggtgccccaaagagaggaggtggatgatggc
caggcccaaattgcggctccaggcttccatggcatcttcctgccctacgcggatgacatc
cgtaccttggacactcctcagctccccacggcctccgagtctcaggtggacaagatgaag
gagatagtacacaagctgcgcttcaaatacaggagtgatgcgtttgagaacccagtcctc
cagcagcactacaggaacctggaagccttggctttagatctcatggccccggagcacata
gaggatctcaccatgcccaatgtgaatatgatggaccagcgtcttggttccctggctcag
gagttcagagatctggtgtaccctgctgactacaacccagagggcaagactgcacccaaa
cgcaaaccagctgaggcggcaggcggcacagaaaagaagcccaaggtggagatgtctgag
gacgagctgaggggtcacgtacagaaaggcaacctgggtaagctgacagtgcctgtgctg
aaggacgcctgtaagcagtttggggtgaaggtcacagggaccaagaaacaggagctaata
gacgccctgactgcacagctcaccaaatga
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