Oncorhynchus masou masou (cherry salmon): 135512523
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Entry
135512523 CDS
T10723
Name
(RefSeq) RB1-inducible coiled-coil protein 1-like isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135512523
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
omm01009
]
135512523
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135512523
03029 Mitochondrial biogenesis [BR:
omm03029
]
135512523
Protein phosphatases and associated proteins [BR:
omm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135512523
Membrane trafficking [BR:
omm04131
]
Autophagy
Autophagosome formation proteins
ULK complex
135512523
Mitochondrial biogenesis [BR:
omm03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
135512523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ubiquitin
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
135512523
NCBI-ProteinID:
XP_064790706
LinkDB
All DBs
Position
3:21013638..21035707
Genome browser
AA seq
1642 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYMNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRECLEKSCSTPAKDSDETEEEKSTDSV
LCPTPTETQRSSTKLPTSVCAPGAGGSPDTAQAQEGSEMTDSSGLRAALQEADSPERANA
PSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLSECRDTIAKLDNQNMKA
IKGLEDRLYALDQMIASCNKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLM
IMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELME
RVRVVDALSTVPQMYCLAVVEVVRRKIFIGHYREWACALVKDGKRLYETEKYKRETFGKL
FRKSFLRNRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRLP
TLCDFEPLHQHVEMLQQLVLATQAASVDEMSRTITDLLSEQRVSCSQSAQRSTAAVTPLT
MRSNSTPGTTFTSSMIPSSLSLPGPLCQPLPGHGPTTLEDLSPDSIDAQTFDFETIGHPN
MDPVLHQAGSLDLDSLAESPESDFMSAVNEFVIENSPTPISDPTSPGMMVESLYSSVINA
IDSKRMHDTTTLERENSKMAALKLSMEKYRTAAEESQTNLWSVKDDLYRHRDLLLKEQRD
FGFALKTMTIEVLNMVDTIRKREEEEHQAEFLSMQQDHENQLQALMEENQVNKNIVKDVQ
RAMLELEGLLEHKKKELTQLEVEREDWAEAENRHTQTARVLEQKISDQAQEVQTLAASRD
SLASQLETLHIEIERGQQKIRQELEGAQQSHLQELEERMRHQHQAQLDTLARENQEALEH
LATENRAKLSEVTDLHTATLTERDCQLRDLEARVIELADLRCKLEVELALKESETEEVRL
LYEEAKQGQQEANVGKATVEAETQSLSEQLAQVNRQLQARNEEYETDLAELRRLMEKDQC
ISELVDRHEEERNQLHRELTALQQQTLDSEGSRVEQLQNLQRDLDLQTVALCEDNEKQRG
SSEEQEQHLRTVICDLQVENDLLAKRIEQDTQTAQERLEKEKALKAAVLDDFKDLKQQKV
EMEKRLSDKIKQLECDLQERQSSEREAGLSEVQTEGRGSDAGAPLSLDSALQEHLQQETA
SLHTQLELLERRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLTEKLRKVTQQ
QEKDKGLIETLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNILALEPTGAGPGPG
HCPGPGTEVEFGAGACYSEPFLDTDRPASVAAIREDDKVDSAVEASMVTVHDNILMMSEE
KQRILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERH
DNYVLFTVGPTLYFLHSESLTALDLKPDPMFASASGASRRPWVLGKVMEKEYCQAKKAQN
RFKVPLGTKFYRVKAVSWNKKV
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtattccaggtcaacaatggaagcactctgacatttgacacagaactt
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaagtacaagattgcaacc
cagcatcaagtcctggttgtgaatggaggggagtgtatggttgcagagaggcgtgtctgc
agctacagtgctggcacggacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgactatcccgaaaaccaccttctctattgagaacgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgtcgcctcgcgaacacaa
cttgctgtggaaatgtttgaagttgccaagaaactttgttctttctgcgaacgcctggtt
catgatgaacacctccaacaccaaggctgggctgccatcatggccaacctggatgactgc
acgctgtcctatcagaagctactgtggaaatttgacacggcatacatgaattatcaacaa
gactttgaggatatcaaattgaaactgacaaaactggggacagcagtctcagtcatggcc
aagatccccctactggagtgtctgacccgccacagctacagagaatgtctagagaagtcc
tgctccactcctgccaaggactccgatgagaccgaggaggagaagtcgactgactctgtg
ctctgccccacccccaccgaaacacaaaggagctccaccaagttacctacgtcagtctgt
gccccgggggcggggggctcacccgacaccgcccaagcccaggaaggcagtgagatgact
gacagtagtgggctgagggcagctcttcaggaggcagactctccagagagggccaacgcc
ccatccttcaacgtcacactgctggactggatcaacgttcaagaccggcccaatgacgtg
gaatcagttgtgaggaaatgctttgactccatcaataggctcgacccacggatcattcaa
ccattcttgtcggaatgtcgagacacgatagccaaactggataatcagaacatgaaagcc
attaaagggcttgaagacaggttatacgctctagaccaaatgatagcaagctgtaacaag
ttggtcaatgaacagaaggaacttgctcagggatttctggccaatcagaagcgtgccgag
aacctgaaggatacgtccgtgctgcctgacctgtgtcttagtcacgccaaccagctgatg
atcatgctgaccaaccaccggaagctgctggacatcaaacagaagtgcaccactgccaaa
caggaactggcgaacaacctacaagttcgactcaaatggtgctgctatgtgatgctgcac
gcggatcaggacggagagaagctacaggccttgctgaggctgctgacagagctgatggag
agggtccgggtggtggacgccctcagcaccgtgcctcagatgtactgcctggccgtggtg
gaggtggtccgcaggaagatcttcataggccactacagagagtgggcctgtgctctcgtg
aaggatggaaaacgtctctatgagactgagaagtataaaagggaaacgtttggcaagttg
ttcaggaaatcttttctcagaaatcgcttgtttagaggacttgactcatggccccccact
tcattttgcacgcgaaagcccagaaagtttgactttgagcttccagatatttcccttggt
gacctgcagtacttaaagacctgttgtcctacagaggtgcagcctttcctcaggcttcca
acactgtgtgactttgagcctttgcaccagcacgtggagatgcttcaacagttggtgcta
gctactcaagctgccagtgtggacgagatgtctcgaactatcactgacttactgagtgaa
caaagggtgtcgtgcagccagagtgctcagagatccacggcagcggtgaccccgttaacc
atgcggtccaacagcacccctgggaccacctttacctcctccatgatcccatcctctctc
agtctcccgggcccactttgccagcccctccctggccacggccccaccacgctggaggac
ctgtccccagacagcatcgacgcccaaaccttcgactttgagaccattggccaccccaac
atggaccctgtcctgcaccaggccggttccctagacctggactccctggctgagagcccc
gagtcagacttcatgtcggcggtcaacgagtttgtgatcgaaaactcgcccaccccaatc
agcgaccccaccagcccagggatgatggtggagtcgctgtactcttcggtcatcaacgcc
atcgacagcaagcgcatgcatgacaccaccactttagagagggagaactccaagatggcc
gcgctaaagctgagcatggagaagtaccgcactgctgccgaggagtcccagaccaacctg
tggagcgtcaaggatgacctgtaccgccacagagacctgctgctgaaggagcagcgagac
tttggcttcgccctgaagaccatgaccattgaggtgctcaacatggtggacaccatccgt
aagagagaggaggaggagcaccaggccgagttcctctccatgcagcaggaccacgagaat
cagcttcaggccctgatggaagagaaccaggtcaacaagaacattgtgaaagacgtgcag
cgggccatgctggaactggaggggctgctggagcacaagaagaaggagctcacccagctg
gaggtcgagagagaggactgggccgaggcagagaacagacacactcaaacggccagggtc
ctggagcagaagatcagcgatcaggcccaagaggtgcagaccttggctgcctccagagac
tccctggccagccagctggagacgctgcacattgagatcgagcgcggccagcagaagatc
cgccaggagctggagggagcccagcagtcccacctgcaggagctggaggagaggatgagg
catcagcaccaggcccagctagataccctggcccgggagaaccaggaggccctggagcat
ctggccacagagaacagggccaagctgagcgaggtcactgacctgcacaccgccaccctg
acagagagggactgccagctgagggacctggaggcccgggtcatcgagctggctgacctg
cgctgcaagctggaggtggagctggccctgaaggagtctgagacagaggaggtgaggctg
ctgtacgaggaggccaagcaggggcagcaggaggccaatgtggggaaggccaccgtggag
gctgagacccagtccctcagcgaacagctagcccaggttaacaggcagctgcaggccagg
aacgaggagtacgagaccgacctggctgagctgaggaggctgatggagaaggaccagtgt
atctctgagttggtggacaggcacgaagaggagaggaaccaactccacagagagctgacc
gccctgcagcagcagaccctggacagcgaggggagccgcgttgagcagctgcagaacctc
cagcgagacctcgacttgcagacagtggcactgtgcgaagacaacgagaagcagcggggg
agttctgaggagcaggaacaacacttaaggactgttatctgcgatttgcaggtggagaac
gacctgctcgccaaaagaatagagcaggacacacaaacagcccaggaacgtttggagaaa
gagaaggccttgaaggctgctgtactagatgactttaaagacttgaagcaacagaaggtg
gagatggagaaaagactgtcagacaaaattaaacaacttgaatgtgaccttcaggaaaga
caatcctctgaaagagaggcagggttgtcggaggtacagacagagggtcgggggtctgat
gcaggggctcctctctccctggactctgcattgcaggagcatctgcagcaggagacagcc
tcgctgcacacccagctggagctcttggagaggaggaagaacgaggagatgcagaacctc
aagacctccctcattgcagaacaacagactaacttcaacactgtgctgacgagagagaag
ctgaaaaaggaacagatcatcaatgatctgacagagaagctgcggaaggttacccagcaa
caggagaaggacaaaggtctaatagagacactgtctgaagaccgggccatcgtcatgcag
gagaagaagcagttggaggaggacctgaaccggctgcgcagcaccgccctggtgtcctcg
gcctactacagccctaacatcttagctctggagcccactggagccgggcctggacctggg
cattgtcctggtcctgggactgaagttgagtttggggctggagcctgctactctgagccc
ttccttgacacagacagaccggcctctgtggccgccatcagagaggacgacaaggtggac
tcagctgtggaggccagtatggtgaccgtacacgataacatcctgatgatgtccgaggag
aaacagaggatactgttacttgagaggactttacatatgaaggaagaggaaaacaagcgc
ctcagtcaaagactgatgtctcaaagcatgtcctcggtgtcgtcacggcattcagagaaa
atcgccatcagagatttccaggttggtgacttggttctgatcatcctagatgaaagacat
gacaactatgtactgttcaccgtgggtcccaccctgtacttcctccactccgagtccctc
acggccctggacctcaaaccagatcctatgtttgcttcagcatcaggagcctcaagacgg
ccgtgggttcttggaaaagtgatggagaaggaatattgccaggcgaaaaaggctcaaaac
cggttcaaagttcctttgggcaccaagttctacagggtgaaggctgtttcatggaacaag
aaagtataa
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integrated database retrieval system
