Oncorhynchus masou masou (cherry salmon): 135512642
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Entry
135512642 CDS
T10723
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135512642
03015 mRNA surveillance pathway
135512642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135512642
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135512642
5.6.2.5 RNA 5'-3' helicase
135512642
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135512642
mRNA cycle factors
Common to processing body (P body) and stress granule
135512642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
NPHP3_N
Helicase_RecD
DEAD
AAA_16
AAA_22
UvrD_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
135512642
NCBI-ProteinID:
XP_064790945
LinkDB
All DBs
Position
24:complement(75221860..75243525)
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AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVNG
PNEGLHNGGVDDVAKASQILSELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDDITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVETTHDYQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYQLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLTNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSSFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
RPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGTGPA
HMAAMNMPIPFNLVVPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRTRGMGNHGSSG
QANGHNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtacgggccgagttctcaaacgctcaccttcctggacaccgaagaa
gcggagctacttggagcagatacccagggatcggagtacgagtttaccgattttacccta
cctagccagacacaaactcaaggccacacccagagtcagctggacaatcaggtgaatggt
cctaatgaagggcttcacaatggaggggttgatgatgttgccaaggcgagccaaattctc
tctgagttgaactttgaggaggatgaagaggacacctattacactaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcgtgtgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatcgtaaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagacgggccgctgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatacctgccaag
gccgactctgtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacataaactgggacagctcccagtggcagccgctgatccaggaccgttgcttcctgtcc
tggctggtaaagatcccctcggagcaggagcaactccgggcccgccagataaccgcccaa
cagatcaacaagctagaggagctctggaaggacaatccaacagccactctggaggatctg
gagaagcccggtgtagacgaggagcctcaacatgtgctgctgcgctatgaggatgcctat
cagtaccagaacatctttggcccccttgtcaaactggaggccgactacgacaaaaagctt
aaagagtcccagacccaagatgatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaggga
gatgagatttgtctgcgctacaaaggagacctggccccactttggaaaggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagcacctgtggaaacaacccacgactaccaggtggatttcgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acgtccgtgtcaggctacatctaccacaaactgctgggccacgaagtggaggatgtcatc
atcaagtgtcagctgcccaaacgcttcactgcccagggcctgcccgatctcaaccactct
caggtgtatgctgtgaagactgtgctgcaaagacccctcagtcttatccaaggccccccc
ggcactgggaaaactgtcacctctgccaccatagtgtaccagctcgccaggcagggcaac
ggacccgtgctggtgtgtgctcccagtaacatcgcggtggaccagctgactgagaagatc
cacatgtcaggtctgaaggtggtccggctgtgtgctaagagcagagaggccatcgactcc
cccgtctcattcctggcgctgcacaaccagatccgcaacatggacagtatgccagagctg
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtctgctgatgagaagcgt
taccgggccctgaagcgcaccgctgagcgagagctgctcacgaatgcggatgtgatctgc
tgtacctgtgtgggggcaggagatccacgtctggccaagatgcagttccgctccatcttg
attgatgagagcacccaggccaccgagccagagtgcatggtgcctgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtctctatttgagcgtttggtggtgctgggcatcagg
cccattcgtctgcaggtgcagtaccgtatgcacccggccctcagctctttcccctccaac
atcttctatgagggctccctgcagaatggagtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccgcagccagacaagcccatgttcttctatgtaactcaaggccag
gaggaaatagccagctctggaacgtcctacctgaacagaactgaggcggccaacgtggag
aagatcacaaccaggctgctgaaggctggggccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagttcagtggttccctccat
acaaaactctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaag
gactttatcatcctgtcgtgcgtacgagccaacgagcaccagggcatcggcttcctcaat
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aacccaaaggccctgtccaagcagcctctgtggaaccaccttctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgagagagagcctgatgcagttcagc
aggccccgcaagctggtcaatgccatcaaccctggagcccggttcatgagcactgccatg
tatgatgcccgtgaggccctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtatttccaaacccacgatcagatcggcatgattgggaccgggccagcc
cacatggcggccatgaacatgcctattcccttcaacttagtggtgccccccatgcctccg
ccaggctacctggcccaggccaacggccctgctgcaggtcgtggtggggtgctgaaaggc
aaagcggggcgtggcgggcgccagaggacccgcggtatggggaaccacggtagcagcggg
caggccaacgggcacaacagccaggctagccaggacgtatcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagtcagccctcccagatgagccagcctggc
ctctcccagcctgaactttcccaggacagttatttaggtgacgagttcaagtcccagatc
gacgtggctctgtcgcaggattcgacttaccagggtgaacgtgcataccaacatggtgga
gtgactggactgtcacagtactag
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integrated database retrieval system
