Oncorhynchus masou masou (cherry salmon): 135513646
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Entry
135513646 CDS
T10723
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135513646
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
omm03310
]
135513646
Transcription factors [BR:
omm03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
135513646
Nuclear receptors [BR:
omm03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
135513646
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
135513646
NCBI-ProteinID:
XP_064792580
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Position
25:40110460..40172400
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AA seq
572 aa
AA seq
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MTMSRRNAPRSRRYCSAASTRVPSPCFLPFYPPDSPSHQAKPMQASPLSLPDPLEPPRAP
WNPPDPQSQAQAPADQEEQAVGSQARHALVMYVCFPLPPSLFTAQIEVIPCKICGDKSSG
IHYGVITCEGCKGFFRRSQQNNAAYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDA
VKFGRMSKKQRDSLYAEVQKHQQRILNERQQQTGEAEALARVYSSSLTNGLNTLNHEIGG
TYANGHVIELPKGQVNGGAPGGYYHGMDSTQPSPDQSGLDMAGMKHIKQEPVYDLTPVTN
LFNYSSYQDSQLAPSNVSMGELDRIAQNIIKSHLETCQYTADELQQLAWQTHSYDDIKMY
QSKTRDMLWQQCAIQITHAIQYVVEFAKRISGFMELCQNDQILLLKSGCLEVVLVRMCRA
FNPLNNTVLFEGKYGGMQMFKALGCDDLVSAVFDFAKSLCSLQLTEEEIALFSAAVLIST
DRPWLMEPRKVQKLQEKIYFALQHIMQKNHMDEDTLAKLIGRIPTLSALCTLHTEELQAF
QQLHPETVNVLFPPLYKELFNPDPNAAITIPK
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgagcaggaggaatgccccgagaagcagacgatattgttcggcagcatccacc
cgagtgccctccccctgtttcttgcccttttacccccccgactccccttcccaccaggca
aagcccatgcaggcatcccctctctctctcccagaccccctggaaccccccagagcccca
tggaaccccccagacccccagtctcaggcacaggccccggctgaccaggaggagcaggcc
gttggttcccaggcccggcacgcacttgtcatgtatgtgtgttttccccttcccccttct
ctgttcacagcccaaatcgaagttataccatgcaaaatttgcggagacaagtcatcagga
atccactatggagtcatcacatgtgagggctgcaaaggattcttcagacgtagtcaacag
aacaacgcagcatactcctgccctcgccagaggaactgtctgatcgacaggaccaatcga
aaccgctgccaacactgccgcttacagaagtgtctcgcgctcggaatgtccagagatgcg
gtgaagtttggccgcatgtcaaagaagcagcgagacagcctgtacgccgaggtgcagaag
caccagcagcggatcctgaatgagcggcagcagcagactggtgaggctgaggccctggcg
cgcgtctactcctccagcctgaccaacggcctcaacaccctcaaccacgagatcggaggc
acctacgccaacggccacgttatcgagcttcccaagggccaggtgaacggtggtgccccc
ggcggctactaccacggtatggactccacccagccctccccggatcagtcaggcctggac
atggcgggcatgaagcacataaaacaggagcctgtctacgacctgacccctgtgaccaac
ctgttcaactacagctcctaccaggacagtcagctggcgccaagcaatgtcagcatggga
gagctagatcgtatcgcccagaacattataaagtctcacctggagacctgtcaatacaca
gcagatgagctccagcagctggcctggcaaacacactcctacgatgacatcaagatgtac
cagagcaaaacacgagacatgctgtggcagcagtgtgccatccagatcacacatgccatc
cagtatgtggtggagtttgccaagcgcatttcaggcttcatggagctgtgccagaatgac
cagatccttctgctcaagtcaggttgtctggaggtggtcctggttagaatgtgtcgggcg
tttaacccactcaacaacacagtgctgtttgaggggaagtacgggggcatgcagatgttc
aaagctctaggctgtgacgatctggtcagcgcggtgtttgactttgccaagagtctgtgc
tctctgcagctcactgaggaggaaatcgctctgttctccgcagcagtgctcatctccaca
gaccggccgtggctgatggagcccaggaaggtgcagaagctccaggagaagatctacttt
gcgctgcagcacatcatgcagaagaaccacatggatgaggacacgctggctaagctgatt
ggtcggatccccacgctgtcggccctgtgtactctccacaccgaggagctacaggccttc
cagcagcttcatcccgagacggtcaatgtgctctttcccccactctacaaggagctcttc
aaccccgaccccaatgcagccatcaccatacccaagtga
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