Oncorhynchus masou masou (cherry salmon): 135514157
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Entry
135514157 CDS
T10723
Name
(RefSeq) tenascin-R-like isoform X1
KO
K06252
tenascin
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135514157
04518 Integrin signaling
135514157
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135514157
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135514157
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135514157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
FN3_Tor_3rd
EGF_2
Fn3_Dep-1_2nd
EGF_Tenascin
Fn3_VIN3
Interfer-bind
DUF4998
Motif
Other DBs
NCBI-GeneID:
135514157
NCBI-ProteinID:
XP_064793475
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All DBs
Position
3:complement(29024359..29153912)
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AA seq
1380 aa
AA seq
DB search
MVLTPWCFTMAPARGWLLGLALALLLLGSQPAPSLSGEEQKLVRTTRVRRQAPPSGPTSP
LNNQTVKEQPMVFNHVYNINVPLESLCSVDLESAAAPPSQASRGAMSSGGGEDPTEFTEQ
TVDTDSQVTFTHRINIPKQACACPAANSMQQLATRIEMLEREVSLLRVQCSSGNCGCEES
SAMGRLDFIPQCSGHGSFNMDLCGCVCEDGWTGKNCSEPRCPDDCSGQGECMEGECVCDR
DFGGDNCSEPRCPADCSGRGLCMDGECICEENFTGEDCTLGRCLNDCSDQGLCTNGTCQC
RPGYVGEDCSLAYCANNCSQKGICKEGFCACQEGFAGDDCSLVAPDLDLRVRGVTERTID
LEWEGSVLMTDYLVTYVATSPGGVQLEIRVPGNTTTCSIPDLEPGIEYNINVYAVLNNII
SVPANAQVSTYLSNPDGLVFKSITETSVEVQWQPFYYSFDGWEISFIPKDNDGGMTAQLP
STITSFHQTGLRPGEEYTVNLVALRDQGRSQPVSAIVTTLIDGPTQLIVRDVSDTVAFVE
WTNPKAKIDQIVLRYGLVGGEGPKTTFRLQPTLSQYSLQVLRPGSRYEVSISGVRKGNES
GTISTEFSTVLLFLSEIDAPKNLHVLSKASTTLELEWDNSEVEVEGYQVVYSTLAGDRYD
KVIVPCNDGPTSRTTLTDLLPGTEYGIGISAMLGTNRSSPATMNARTGLDVPMDLTVTAS
TDNTITLLWGVVQGPIDQYMVTYTSSSGLTMEVTVPKDVTTTTLDDLEPGTEYTITVAAQ
RGRQQSTAATIDAFTGFSPVIALYLSDITWDSVTVAWSAPAPPADLYILSYSSEDGTDTS
KVTLDGSKTRSSVEGLLPSTQYTVSLITIQGEVTSEAVTATLTTGMDPPKEMTVSYVTED
SVIISWLRPFAPFDYYKMSYQSARGRVDSIVIDNDVTNYTLSSLHPATEYEINLNAVRGS
QESKSITLSVFTAMDMPMELTALNITPQGALLQWNPPLSSVDNYVLTLTCNQVTADTFLV
EGGKQEHQLTKLLPSTTYSVALYATKGPLTSGTVIANFATPMDAPLNLTASEVNHRSALI
SWQPPITDIDNYMLTYKSADGSRKELILDAEDTWIRLEGLAEITEYTVRLQAARGLETSD
IISTAFTTGNRLFATPQNCAQHLLNGESVSGVYTIYINRDANQGVQVYCDMTTDEGGWIV
FQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQKLAAQGRYELRIDMKDGQESVYA
NYDKFIIGDARNLYKLRIGEYNGTAGDALIYHQGRPFSTKDRDNDIAVTNCALSYKGAWW
YKNCHRANLNGKYGESRHSQGINWHNWKGHEFSIPFVEMKMRPFNYRSISGKRRRSTPPE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggttctaacgccgtggtgtttcaccatggcccctgcacgtggctggctgctgggcctg
gctctggctttactccttctggggtcccagcctgctccatctctatccggtgaggagcag
aagctggtccggaccaccagggtcagacgacaggcccctccaagtggccccaccagccca
cttaacaaccagacagtcaaggagcagcccatggtcttcaaccatgtgtacaacatcaat
gttcccctggagtctctgtgctctgtggatcttgaatcagcagcggctccacccagtcag
gcctccaggggagcaatgtccagtgggggtggggaggaccccacagagttcacagagcag
acagtggacacagacagtcaggtcaccttcacccaccgcatcaacatccccaaacaggcc
tgcgcctgtcccgcagccaacagcatgcagcagctggccacccgcatcgagatgctggag
agagaggtgtcgctactcagagttcagtgcagctctggcaactgtggctgtgaggagagt
tcagccatgggtcgcctggacttcatcccccagtgcagtggccacggcagtttcaacatg
gacctgtgtggctgtgtgtgtgaggacggctggacgggcaagaactgctctgagccacgc
tgcccagacgactgctccggacagggagagtgtatggagggcgagtgtgtctgtgaccgc
gacttcggaggggacaactgctcggagccccgctgccctgcggactgctccggtcgaggg
ctgtgcatggacggggagtgtatatgtgaggagaatttcactggagaggactgtacgctt
ggtcgctgcctcaacgactgctctgaccagggcctgtgcaccaatgggacctgccagtgt
cgcccgggatatgtgggagaagactgctctctggcctactgcgccaacaactgtagtcag
aagggcatctgtaaggagggcttctgtgcctgccaagagggcttcgctggagacgactgc
tctttagtggctccggatctggacctgcgtgtgcggggagtgacagagcgtaccattgac
ctggagtgggaggggtcggtgttgatgacagactacctagtcacctacgtggccaccagc
ccaggtggggtccagctggagatcagggtccctgggaacaccaccacctgcagtattcca
gacctggagcctggcatcgagtacaacatcaacgtctacgctgtgctcaacaacatcatc
agtgttcctgccaatgctcaggtgtcaacctatctctcaaatccagacggtttagtcttc
aaatccatcacagagacgtccgtggaggtgcagtggcaaccattctactactcgtttgat
ggctgggaaataagcttcattccaaaggacaatgatggagggatgacagcccagctgccc
agcaccattacttcattccaccagacaggcctgagaccaggggaggagtacaccgtcaac
ctggtagctctcagggaccagggccgcagccagcccgtatccgccatcgtcaccacattg
attgatgggccgactcagctgatagtgcgtgacgtctcggacacggtggccttcgtggag
tggaccaatcccaaggctaagatcgaccagatagtactgcgttatggcctggtggggggg
gaaggtcctaagaccaccttccgtctgcagcccaccctcagccagtactccctgcaggtg
ctgagaccaggctcgcgttacgaggtgtccatcagtggtgttcgcaagggcaatgagagt
ggaaccatctccacagaattcagtaccgttctgttgttcctctcagagatcgacgcaccc
aagaacctgcatgtgctgtccaaggcctccaccaccctggagctggaatgggacaacagc
gaggtggaagtagaggggtaccaggtggtctacagcaccctggcaggggaccggtatgat
aaggtcatcgttccatgcaacgatggacccaccagcagaaccacactcactgacttgttg
ccaggtacagagtatggcattggtatttcggccatgcttggcaccaaccggagttctcct
gccacaatgaacgccagaactggtctagatgtccccatggacctgactgtgacagcgtcc
acagacaacaccatcaccctgctgtggggggtggtccaggggcctatcgaccaatacatg
gtcacctacacctcctcatctggactgaccatggaggttactgtccccaaggacgtgacc
accaccactcttgatgacctggagccaggcacagaatacaccatcactgtagctgcccag
agaggcaggcagcagagcactgcagccaccatcgatgccttcacaggcttcagccctgtc
attgctctctacttgtctgacatcacgtgggactcggtgacggtggcatggagcgccccg
gccccacccgcagacctctacatcctcagctacagctctgaggacggcactgacacctcc
aaggtcactctggatggatccaagacccggtcctctgtggagggtctccttccctccaca
cagtacacagtcagccttatcaccatacagggagaggtgacgtctgaagctgtcacagcc
acgctcaccacaggaatggacccaccaaaagagatgactgtgtcatatgtcactgaagac
tctgtcatcatatcatggttgagaccttttgccccctttgactattacaagatgtcctac
caatcagcaagagggcgagtggacagcatcgtgattgacaacgacgtgaccaactacacc
ctgtccagcctccacccggcaacagagtatgagatcaacctgaacgccgtgaggggaagc
caggaaagcaagtccatcaccctcagtgtcttcacagcgatggacatgccaatggaacta
acagccctcaacattaccccacaaggagctttattgcagtggaaccctcctctgtccagc
gttgacaactacgtgctcaccctcacctgcaaccaggtgacagctgacaccttcctggtg
gagggtgggaaacaggagcaccagctcactaagctcttgcctagcaccacttactctgta
gcgctctatgctaccaagggacccctgaccagtggaacggtcatcgccaactttgcaaca
cccatggacgctcctttgaacctgaccgccagtgaggtgaaccaccgcagtgccctcatc
tcctggcaaccgcccatcacagacatagacaactacatgcttacatacaaatcagccgat
ggcagcagaaaggagctgatcctggatgcagaagacacgtggattcgtctggagggcctg
gcagagatcacagaatacactgtgaggttgcaggctgccagaggattagagaccagcgat
atcatctctacagccttcacaacaggaaaccgtctgtttgccacccctcagaactgtgcc
cagcatctgctgaacggggagtccgtgagcggtgtctacaccatttacatcaacagagac
gccaatcagggagtgcaggtctactgtgatatgaccacagacgaaggaggctggatcgtg
ttccaacgtcgtcagaatggccttaccgacttctccaggaagtggagtgactacagggtc
ggctttgggaacctagaggatgaattctggctcggtttggacaacatacagaagcttgca
gctcaaggtcgctacgagctccggatcgacatgaaggatggccaggagtctgtctatgcc
aactatgacaaattcatcatcggtgatgccaggaatttatacaaactcaggataggagag
tataatggcacagctggggatgcactgatctatcaccaaggccgtcccttctccaccaag
gacagagacaatgacattgctgtgaccaactgtgctctgtcctacaaaggagcctggtgg
tacaaaaactgccatcgggccaacctgaatggaaaatatggcgagtcgagacacagtcag
ggtatcaactggcataactggaagggtcatgagttctctatcccattcgtagagatgaag
atgaggccatttaactaccgcagcatcagtggcaagcgaaggaggtccactcctccagaa
taa
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integrated database retrieval system
