Oncorhynchus masou masou (cherry salmon): 135514610
Help
Entry
135514610 CDS
T10723
Symbol
pcf11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135514610 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135514610 (pcf11)
03019 Messenger RNA biogenesis [BR:
omm03019
]
135514610 (pcf11)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135514610 (pcf11)
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135514610 (pcf11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
135514610
NCBI-ProteinID:
XP_064794110
LinkDB
All DBs
Position
26:750805..785178
Genome browser
AA seq
1683 aa
AA seq
DB search
MDCLVINGYVSDKIGLVFDRSHIAKMDDAAREDACREYQSSLEDLTFNSKPHINMLTILA
EENLHFAKDIVAIIEAQITKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLVTSFICVF
EKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSHDPAWPIKALPPTVNASIHVNPKF
LKHPEEVTSPRALSPAPLVRAPAPAPQPAVVPSVSEKSITQEQVIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLAANVVLSTPAIVPKSTLPPSVIKSCXPPVSDPKPPTRDPRLNRAG
PGALQAKESTSHKKEGHGMGGPAHTPEKQLPERPGRPERTRPPKKELLEVKTKSKSLSPM
AKGVLGKSKHYEAENMKTTADATGKKDPRLRKHLHDKADPKEEVKEKKKCTDKEKEMDEA
VMKASGRGKMANGSVSKPEREKPEPVEKLENQIRGNARTNARKRSRSPSLHLHSPKRKTE
RRSPKRRARSISPSPPLHKPGKGGRQSGGKHSSHHEDPQHGTTREERVTPKKSSSEPRRT
KRPAEERPVEARDTHSSPRTTSEGKETKENAKRWRSGWEENKHLKLSSEEAHGKGAGPPQ
RRPSYSSSKRPTTPKQHRLSVDANLQIPEVLHSASKRDLLKKASKHLENGEISHDDFLNV
AHQIKQLFQYQEEKQRGDSWEGSSEDGHGHAHPHHLPPTRKKPLLATPTGGVSSGADLSD
AELTYYEHKSKLRRTQVMLWQQEQGGEGWDGEDSQEDVEGRPGEGPGGAKTEVNRETNAL
PSGMKFTRLPKDRLKEVEEEQPTPAAIIQEYSHGNEFPRLKSLPGLRFRRIQDPRESTAT
DRLKAGERERNSPLSERLPNHRPPYDEREEPKSGYNAPPRRYGGGPLSEDHAVKPPYPRY
DDPRKHDRIPPKPPSGPVLQNSVSLALDGPIRKSPVPLPVPAYERERLSPLQQMDAAEMS
PVPRFESPNSEHSCDEGPLDTPPLPRPHHPGGPPRGPVLSSVRSKHVESPGHTPPHTADG
PQRYDGGPKGGPPSPRYDGPHKGTQSGYDGPGHIGQPGRPHPGGRYEGVQGPGRYDGPGC
SSHGPSRYDGPYPQGPGRFDGPALHKGPEKFDGPGRYDGPSMPHVPMRGDPQGIGGRFDG
GPPQQGRLSGRYDGRFDGQGPGPMRFDGPMQSNRFDGPMNFNSSHMQPGPGRFDGLMRFQ
QGPMRFDGAPNQPGPMRFDGPGNPSTPMGQPGPMRYDPLPSLPPQGMPPRFDCPSGQQVS
PRYHTTPNLQPPLRPLGTPMYDPVNPGGPQQFQTFPVQQNVVGQQGANFTVSPVPVSQAG
FNNSYVRPPFYTPGVPLPSAGNMQQPMNMLSNLGQPFIPPSTVPFNQPAPQFPPPESHFG
QVDVNDLLSKLISTGIISTGGIKPAQSTDTATAHSGTESAATQPTPPMVEEEEEEEQEED
ENVPDLTGFVIEDMKQRYDSVVTKLYTGIQCYSCGMRFTASQTDVYADHLDWHYRLNRSE
KDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSLFFEKVNEEVVQKTQEAAKEKEFQSV
KAAADVVDETCDICQEQFEMYWEEEEEEWHLRDAIRVDEKTYHPSCFEDYNNTSSFLDVT
PSPIKLMENPLGAFIKRESDEVTSCCAAVKQEVESSLSETGGEAQNVKDEVQVKMEGETS
AIS
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctcgtaataaatggttatgtttctgataagattggtttagtatttgatcga
tcacacatcgcaaagatggacgacgcggcgagggaagatgcctgccgagagtatcagtcc
tccctcgaagatttgacattcaacagtaaacctcacatcaacatgctgaccattctggca
gaggagaatctgcacttcgccaaggatatcgtcgcaataattgaagcacaaatcaccaag
gctccagctgccgagaagcttccagttttgtacttagtggattccatagtgaagaatgtt
ggaggcgaataccttgcagtgtttgctaaaaacctagtcacttcatttatatgtgttttt
gaaaaggtggatgagaacactaggaaaagtctgttcaaattacgctccacctgggatgag
atcttcccactgaagaaactctacgctctggacgtgcgagtcaactctcacgacccggcc
tggcccatcaaagcactgccccctactgtgaacgccagcattcatgtcaaccctaagttt
ttaaaacatcctgaggaggtgacctcccctagggccctgtcccctgcacccctagtccgt
gccccagcccctgctccccagcctgcagtggtccccagcgtcagtgagaagagcatcacc
caggagcaggtgataaggcagcagctgctggccaagcagaaacagctactggagctacag
cagaagaagattgagcttgagctggagcagaccaaggcacaactggctgctaacgtggta
ctgtcaactccagcaatagtgccaaagtccaccctgcctccctctgtcatcaaatcctgt
natccccctgtctccgaccccaaaccccccaccagggacccccgcctcaaccgggccggc
ccaggggccctccaggccaaagaatcaaccagccataagaaagaaggccatggtatggga
ggaccagcacacacaccagagaaacaactgccagagcgacccggcaggcccgagaggaca
cggccccccaagaaagaacttctagaagtgaaaaccaagtccaagtccctctctcccatg
gctaaaggggtgcttgggaagagcaagcactatgaggctgagaacatgaagacgacagcg
gatgccacgggcaagaaagaccctaggctgaggaaacatctccatgacaaggccgacccg
aaagaagaggtgaaagagaagaagaaatgcactgataaggagaaagagatggatgaggca
gtgatgaaggcatcaggcagggggaagatggccaacggctcagtcagcaaaccggagcgt
gagaaaccggagcctgtagagaaactggagaaccagatcagagggaatgccaggaccaat
gccaggaaacgatcccgttccccctcgctgcacctgcactcacctaagaggaagactgag
aggaggtcccccaagaggagagccaggagcatctccccctctcctcctttacacaaacct
gggaagggagggaggcagtcaggaggcaagcactcctctcaccatgaggacccccagcac
gggaccaccagagaggaaagggtaacccccaagaagagctcgtctgagcccagaagaacc
aagaggccggctgaggagaggccggtggaggccagggacacgcattcctccccccgcact
acctcagagggcaaggagaccaaggagaatgccaagcgctggaggagtggctgggaagag
aacaaacatctgaagttgtcgtcagaggaggctcatgggaagggggcaggtcctccacag
agacggccgtcatactccagcagcaagagacctaccacccccaaacagcatcgccttagt
gtcgatgcaaacctgcagatcccagaggtgcttcactctgccagcaagagagacctgctc
aaaaaggccagtaagcatctggagaacggagagatcagccatgatgacttcctgaatgtg
gctcaccagatcaagcagctgttccagtaccaggaagagaagcagcgaggagactcctgg
gagggctccagtgaggatggccacggacacgcccacccacaccacctcccaccaaccagg
aagaagcccctgctggccacacccacagggggagtgtcctccggggcggacttgtccgac
gcagagctcacctactatgaacacaagtccaagctgaggaggacccaggtgatgttgtgg
cagcaggagcaaggaggggagggctgggatggagaggacagccaggaggatgtagagggg
aggcccggggagggccctgggggtgccaagactgaggttaacagggagactaacgccctt
ccttcagggatgaagttcaccaggcttcctaaggacaggctgaaggaggtagaggaggag
cagcccaccccagcagccatcatccaggagtacagccacgggaatgagttccccaggctc
aagtctctgccagggctacgcttcaggaggatacaagaccccagggagtccaccgccact
gacagactcaaagctggtgaaagagagcgaaactcccctctcagtgagcggctgcccaat
cacagaccaccgtacgatgagagggaggagcctaagagcggctacaatgcccctcccagg
cggtacggaggaggtccgctgtctgaagaccatgctgtcaaacctccgtacccccgttac
gatgaccctcgcaaacacgaccgcatcccccccaaaccccccagtggcccggtgctccag
aactcagtcagcctggcactggacggccccattaggaagtccccggttcctttaccggta
ccagcatacgagcgggagcgcctttccccgttacagcagatggacgcggcagagatgagc
cctgtcccgcgctttgagagccccaacagcgagcactcgtgtgacgaagggcccctggac
accccccctctacccagaccccaccacccaggaggacccccccgtgggcccgtgctctcc
tcagtacgcagcaaacatgttgagtctccaggacacacccctcctcacaccgcagatggc
ccccagagatatgacggtggtcccaaaggaggaccaccttcgccacgctatgacggaccc
cacaagggcactcagtctgggtacgacgggcctggtcacataggtcagcctggcaggcct
caccctgggggccgttacgagggcgtccaggggcccggtaggtacgatggaccagggtgc
tcctcacacggcccatcaaggtatgatgggccctaccctcagggccccggcaggttcgac
ggccccgctctacataaaggaccagagaagtttgacggaccaggaagatacgacggcccc
tccatgcctcacgttccaatgagaggggacccacaaggcattgggggaaggtttgacggc
ggacctccgcagcaaggtaggctatcggggcgatatgacggtagatttgacggacagggg
cctgggccaatgcgttttgacggccccatgcagtccaaccgcttcgatggtccaatgaac
ttcaacagctcccatatgcagcccggccctggaaggttcgacggactaatgaggttccag
caaggccccatgagattcgacggcgctcccaaccagccaggcccgatgcgtttcgatggc
ccagggaacccctccaccccaatgggccagcccggccccatgcgctacgaccccctgccc
tctctgcccccccagggcatgcccccacgctttgactgcccctccggccagcaggtgtct
cccaggtaccacaccactcccaacctgcagcccccgctgcggccactagggacacccatg
tacgacccagtcaaccccggaggcccccagcagttccagacgttcccagtgcaacagaac
gtggtgggccaacagggggctaacttcacggtgtctcccgtccctgtgtcccaggctggg
ttcaacaactcctacgtcagacctccgttctacacacctggtgtgcctctgccatcagca
gggaacatgcagcagccgatgaatatgctttctaaccttggccagcccttcatccctccc
agcacagtgcctttcaaccagcctgctccacagttccctcctccagagagtcactttggg
caggtagatgttaacgacctgctgtccaagctcatttccaccggcatcatctctaccgga
ggcatcaaaccagctcagagtacagacactgctacagcacacagcggtacagagtcagcc
gccacccaaccgacccctcccatggtagaagaggaggaagaggaagagcaggaggaggat
gagaatgtcccagacctcaccggcttcgtcatcgaagacatgaaacagcgctatgacagc
gtggtgactaagctgtacacggggatccagtgttattcctgcggcatgcgtttcactgcc
tctcagacagacgtctacgctgaccacctggactggcactaccggctgaaccgttccgag
aaagacatcagcaagaaggtcacccatcgccgctggtactacagcctcacggactggata
gagtttgaggagatagcggacctggaggagcgggccaagagcctgttctttgagaaggtg
aatgaggaggtagtgcagaagacccaggaggccgccaaggagaaggagttccagagtgtt
aaagcagctgcagatgtggtggatgagacgtgtgatatctgccaggagcagtttgagatg
tactgggaggaggaggaagaggagtggcacctgagagatgccatcagagtcgacgagaag
acatatcatccttcatgttttgaagattacaacaatacatcttcgttcctggacgtcacc
ccgtcccccattaagctgatggagaacccgctgggtgcgtttattaaacgtgagagcgat
gaggtcacttcctgctgtgctgcggtgaaacaggaagtggagtcttcgttgtcggaaacg
ggcggtgaggctcaaaatgtgaaggatgaagttcaggtgaaaatggagggagaaacgagt
gcaatttcctaa
DBGET
integrated database retrieval system
