Oncorhynchus masou masou (cherry salmon): 135515600
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Entry
135515600 CDS
T10723
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
omm03016
]
135515600
Enzymes [BR:
omm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135515600
Transfer RNA biogenesis [BR:
omm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135515600
Prokaryotic type
tRNA splicing ligases
135515600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
135515600
NCBI-ProteinID:
XP_064795295
LinkDB
All DBs
Position
27:complement(9814572..9825382)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMQVEGVFYVNESLEKLMFEELRNACKGGGFG
GFLPAMKQIGNVAALPGIVHKSIGLPDCHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMTAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIQVNDRQLACARIFS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNIDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVCD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcgtacaatgacgagttacaatatttggacaagattgacaagaactgctgg
cgaatcaagaaaggtttcgttccaaatatgcaggtggaaggagtgttttatgtcaacgag
tccctggagaagctgatgtttgaggagctgcgtaacgcgtgtaaaggaggaggttttggt
gggtttctccctgccatgaaacagattggtaacgttgcagctctgccgggtatagtccat
aagtccatcggcctgccagactgccactcggggtatgggttcgccatcggaaacatggct
gccttcgacatgagcgaccccaacgctgtggtatccccaggtggtgtggggtttgatatt
aactgtggagtgcgtctactaaggaccaacctcgacgagggagacgtccagcctgtcaag
gagcagctggctcaggccctgtttgaccacatccctgtaggagtcggctccaagggagtc
atccctatgaccgccaaggatctagaggaggctctagagatgggagtggactggtccctg
agagaaggctatgcctgggcagaggataaggagcactgtgaggagtatggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggccttcctcagctgggt
actctgggggcagggaaccactacgctgagatccaggtggtggatgagatctataatgac
tatgctgctaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagt
ggcagcagggggctgggccaccaggtggcgacagatgccctggttgccatggagaaggcg
atgaagcgagacaagatccaggtgaacgatcgtcagctggcgtgcgcccgtatcttttca
gaggagggacaagactacctgaaaggaatggccgctgccggcaactatgcctgggtcaac
cgttcctctatgaccttcctcacacgacaggcgtttgccaaggtgttcaccacgacccct
gatgacctggatatgcatgtgatctatgacgtgtctcataacatcgccaaggtggaggaa
cacatggtcgatgggaaacagaagactctactgctgcatcgcaagggatccacccgggcc
ttccctccacaccaccccctcatccctgtagactaccagctgacaggccagccggtgttg
atcgggggcacgatgggcacctgcagttacgtcctgacgggcacggaacagggcatgaca
gagaccttcggcaccacctgccacggcgcgggtcgggctctgtctcgggccaaatcccgc
aggaacatcgacttccaggacgtgttggacaagctggcagacaagggtatcgccatcagg
gtggcttcgcccaaactagtcatggaagaggctccagagtcgtacaaaaacgtgtgtgat
gtcgtcaacacgtgtcacgatgctggaatcagcaagaaagccatcaaactacgacccatc
gctgtgatcaagggataa
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