Oncorhynchus masou masou (cherry salmon): 135515677
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Entry
135515677 CDS
T10723
Symbol
rxrga
Name
(RefSeq) retinoic acid receptor RXR-gamma-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03320
PPAR signaling pathway
omm04148
Efferocytosis
omm04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
135515677 (rxrga)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
135515677 (rxrga)
03320 PPAR signaling pathway
135515677 (rxrga)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135515677 (rxrga)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
omm03310
]
135515677 (rxrga)
Transcription factors [BR:
omm03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
135515677 (rxrga)
Nuclear receptors [BR:
omm03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
135515677 (rxrga)
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GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
135515677
NCBI-ProteinID:
XP_064795420
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Position
3:36805412..36851650
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AA seq
474 aa
AA seq
DB search
MDNNESCLHLNSSVQVSHLSSTPSQPLSIMVGPPHPHHHHPHHHHHPSVISTTVNPGRPH
PSPISTLGSPYNGLGGSPYSVITSSSLGSPGVSMPHTPTIGFSTLSSPQVNSLNSVSSSE
DIKPPPGLAGLGHMNSYSCMSPGSMSKHICAICGDRSSGKHYAVYSCEGCKGFFKRTIRK
DLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRDKSDNEVESTSS
FNVDMPVEKILDAELAIEPKTEAYMEASTGNSTNDPVTNICQAADKQLFTLVEWAKRIPH
FSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDR
VLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPIEVEALREKVYASLESYTKHRY
PEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggataataatgaatcgtgtctacatctaaattcttctgttcaggtctcccacctgagc
tccaccccctcacagccccttagcatcatggtgggcccccctcaccctcaccaccaccac
ccccatcaccatcaccacccctccgtcatcagcaccaccgtcaaccccgggcggccccac
ccatcccccataagcaccctgggctcgccatacaatgggctgggcggctcgccgtactcc
gtcatcacgtcgtcctctctgggctcgccaggtgtctccatgccccacacgcccaccata
ggcttcagcacgctctccagcccacaggtaaactctctgaacagtgtgagcagcagtgag
gacatcaagcctcctccaggcctggctggactgggtcacatgaacagctacagctgcatg
agcccagggtccatgtccaagcacatctgtgccatctgtggggaccgatcctcagggaaa
cactatgccgtatacagctgtgaaggctgtaaaggcttcttcaaaagaaccatcaggaag
gacctcacttacacgtgtcgagacagcaaggagtgcctgatcgataagcgccaacgcaac
cgctgccaatactgtcgctaccagaagtgtctggccatgggcatgaagagagaagctgtg
caggaggagcgtcagcggggccgggacaagagtgataacgaggtggagtcaaccagtagt
ttcaacgtggacatgccggtcgagaagatattggacgcggagttggccatcgaacccaag
actgaagcttacatggaggccagcacaggcaactctacgaacgacccggtcaccaacatc
tgccaggcagcagacaagcagctattcaccctggtggagtgggccaaaaggatcccccac
ttctctgagttgcccctggacgaccaggtcatcttattacgagcaggctggaatgagctg
ctcatcgcctcgttctcccatcgctctgtgacagtgaaggacgggatcctcctggccacg
ggcctccacgtccaccgcagcagcgcccacagcgcaggagtgggctccatctttgacaga
gtgctgacggagctggtgtctaagatgaaagacatgcagatggacaagactgagctgggc
tgcctccgagccatcgtcctcttcaatccagatgccaagggcctgtctaatcctatagag
gtggaggccctgagagagaaggtgtacgcctcgctggagtcctacactaaacatagatac
ccagagcagcctggcagatttgccaagctgttgctgcgtctgcctgcactgcgctccatc
ggcctcaagtgtctggagcacctcttcttcttcaagctgatcggagatacgcccatagac
acgttcctcatggaaatgcttgaagcgccgcaccagatcacatga
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integrated database retrieval system
