KEGG   Oncorhynchus masou masou (cherry salmon): 135515812
Entry
135515812         CDS       T10723                                 
Name
(RefSeq) roquin-1-like isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:omm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:omm03000]
    135515812
   04121 Ubiquitin system [BR:omm04121]
    135515812
Transcription factors [BR:omm03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    135515812
Ubiquitin system [BR:omm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    135515812
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 zf-CCCH_UNK zf_CCCH_4 Prok-RING_4 FYVE NS3_helicase_C Baculo_IE-1 zf-RING_6 RING_XB3-XBAT31
Other DBs
NCBI-GeneID: 135515812
NCBI-ProteinID: XP_064795633
LinkDB
Position
3:complement(37168390..37210515)
AA seq 1104 aa
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD
IEQLPVNTALLQLVGGQVPKIQPVALITSPEDAQHYEEASQCVEELALYLKPLSNTRGVG
LSNTTLSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLVARLPGSSGLLSDDGLSLDVGVTRKPS
PLTNGSAVPPMPQLIARGTDLVTYDLLRKPKMDGGSNSSPGSPPDSLDSGPKQGYPQPPH
AMGYSRGPGDHMSMPKQMPSGVVPRGPQMYPQQLSEMYYSDSRPPPSSSQYDPSHYPQGY
PYQQPPQYAPQRYIRNPPPPSEPAGLPYQDPYPDYGPPDRPYPAPHSGPPFSYPPPSHYD
TRGCHGPYPGPPPPPQPYPSQRDDMVRMSPAPLEGPPYHQEQAARERYPPEGFYPPGAQP
QTLRSYVREPYGRSSQPSLDYLHHRRKELMAQLEERKVIAPSPTLPHNFPSDYPPEYGEE
SSKAFGKCREPDYAGQYSPWSCDTIGSYIGTKDSKPKDVMAPGAMEMMNVDGKGRRGEPS
MEAQVRRGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPMQALGSTQGPKHMAI
AAEYSYENHGGWGGASYPSHQTVSSSQGHFSERLPMPTQDREQLKTELQQVNQQINQQSQ
IHGMELSQPGQNQGQQGGKWPGPAGGSGSAAPVSSEQLSMELHQVEREIGKRTREMDMDS
QVAHEVLYKTKTAENGQQDHKAQLEEIALALGEVSNGSSSLVQDGGVGGAMLSLTTRASS
LSLCSEPGPGGSDLQKNGVVHSCS
NT seq 3315 nt   +upstreamnt  +downstreamnt
atgcccgtgcaagccccacaatggacagagttcctgttgtgtcccatttgcactcagacg
ttcgaggagacggtgcggcggcccatttcgctgggttgtggccacacagtctgcaagatg
tgcctgaacaagctgcaccgcaaggcctgccccttcgaccagacggctatcgccactgac
atcgagcagctgcccgtcaacacagccctgctgcagctggtggggggacaggttcccaag
atccagccggtggcccttatcaccagcccagaagacgcgcagcactatgaggaggccagt
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacaccagaggggtgggt
ctgagcaacacgaccctgagtatgctgagtcgacccatgcagaggaagctggtgaccctg
gtccactgtcagctggtggaggaggagggccgggtgcgggccatgagggcagcaaggtct
ctgggggagcgcacagtcacagagctcatcctgcagcaccaaaacccccagcaattgtca
tccaatttgtgggccgccgtccgggccagaggctgccagttcttgggtccagccatgcag
gaggaggctctgaagctggtgctgctggctctggaggatggctcggccctgtccaggaag
gtcctggtgctgttcgtggtccagcggctggagccacgcttcccccaggcctccaaaacc
agcataggccacgtggtgcagctcctttacagggcctcctgctttaaggtgaccaagcgg
gacgaggactcgtcgctgatgcagctgaaggaggagttccggacgtacgaggcactgcgg
cgcgaacacgactcccagattgtccagatcgccatggagggcggcctccgcatcgcccct
gaccagtggtcttccctgctctatggggaccagtctcacaagtcccacatgcagtccatc
atcgacaagttgcagacgccggcttcgtttgcccagagcgtccaggagttgaccatcgcc
ctgcagaggacgggcgaccccgccaaccttaaccgcctccgaccacacctggagctcctg
gccaacatcgatccgagccctgacgccccccctcccacgtgggagcagctggagaaaggt
ctggtggcggtgaagactgtagtccacggcctggtagatttcatccagaaccacagcaaa
aagggagccgacccacaacagcccccccagcacagcaagtacaagacttacatgtgtcgg
gacatgaagcagaagggaggctgtcctcgaggagccagctgtaccttcgcccactctcag
gaggagctggagaagtaccgtaaaatgaacaagcgtttggtagctcgcctccctggctca
tctggcctactgtcggacgatggactctctctggacgtgggggtgacccggaaaccctcg
cccctcaccaacggctcagccgtaccccccatgccccagctcatcgcccgtggcaccgac
cttgtgacctacgacctgttgcgcaagcccaagatggatggcgggagcaacagctccccg
ggatcgccccctgactctctggactcggggcccaaacaagggtacccccagccaccccat
gccatgggctactccaggggaccaggagaccacatgtccatgcccaagcagatgcccagt
ggcgtggtgccccgggggcctcagatgtacccgcagcagctatctgagatgtactactct
gactctcgccccccgccctcctcctcgcagtacgacccctcgcattatccccaaggttac
ccctaccagcagccccctcagtacgccccccagcgctacatccgcaacccccctcccccc
agcgagcccgccggactcccctaccaggacccctaccctgactacggcccacccgatcgc
ccttacccggccccccactcgggccctcccttttcctaccctcccccatcccactatgac
acccggggctgtcacggcccttaccccggcccccctcctccgccccagccctacccctcg
cagagggacgacatggtccggatgagccccgcacccctggaagggcccccttaccaccag
gagcaggctgccagggagaggtaccccccagaaggattctacccaccgggggcccagccc
caaaccttgaggtcctacgtcagagagccgtacgggcgctcctcccagcccagcctagac
tacttgcaccaccgccgtaaggagctgatggcccagctggaggagaggaaggtcatagct
ccctcgcccaccctcccccacaacttccccagcgactaccccccagaatatggggaggag
agctccaaagcctttgggaagtgcagggagcccgactacgcgggccagtactctccctgg
tcctgtgacaccatcggctcctacatcggcaccaaggactcgaagcccaaagatgtcatg
gcgcccggggccatggagatgatgaatgtggacggtaaaggtaggcggggggagccctcc
atggaggcccaggtcaggcgggggacagaggtgaaggacgacgaccccatcatccctttc
ggcccccagcctactgtgtcgcgcttcggggccatctcacgcacctccaagacaggctac
cagacaacaggccccatgcaggccttgggctccacccagggacccaagcacatggccata
gccgcggagtactcctatgagaaccacggaggctggggcggagcctcctacccttcccac
caaactgtctcctcctctcagggacacttcagtgaaaggctgcctatgccaactcaggac
agagagcagctgaagactgagctccaacaggtcaaccagcagatcaaccaacagtctcag
atccacggcatggagctctcccagccaggtcagaaccagggccagcagggggggaagtgg
cctggtccagcggggggttccggcagtgctgccccagtgtccagcgaacagctcagcatg
gagctccaccaggtggagagggagatcggcaagaggacccgcgagatggacatggacagc
caggtggctcatgaggtcctgtacaagacaaagactgcagagaatggccagcaggaccac
aaggcccagctggaggagattgctctggccctgggtgaggtgtcgaatggctccagcagt
ctagttcaggatggcggtgtgggcggagccatgctgtcactgaccactagggcgtcatcg
cttagcctgtgttctgaaccaggacccgggggctctgatctgcagaagaacggtgtggtc
cattcctgctcctag

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