Oncorhynchus masou masou (cherry salmon): 135516231
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Entry
135516231 CDS
T10723
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03015
mRNA surveillance pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135516231
09122 Translation
03013 Nucleocytoplasmic transport
135516231
03015 mRNA surveillance pathway
135516231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135516231
03041 Spliceosome [BR:
omm03041
]
135516231
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135516231
Spliceosome [BR:
omm03041
]
Complex C
Other components
EJC/TREX
135516231
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
135516231
NCBI-ProteinID:
XP_064796443
LinkDB
All DBs
Position
27:43242425..43271440
Genome browser
AA seq
1685 aa
AA seq
DB search
MADEDVTLNGKPLQSLRVADLKAALEQRCLPKSGAKNTLIKRLKGALMLENLQRTSTPHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADESPAGPEEEEHTEEGN
DSDSYNPDKHRPMPSQPPLTRAEEEGGGGPMMMGHQGQGMMMGHQGQGMMMGKGQGMMGQ
GMMSRRPDFGPGSVPQESPDAPGGPGSWMQQRPSLQHGLHHEEPTTPSPPRAVASLSVRV
LGDPERQGLPPSMPPRAQTQEKEGTAPADDDRPAHSVLHLSRSARAAAGSNRVQEDCDDD
DDSSEEDEDEWGPAARRGGGRGLAPPPHLQQPSPSVPAARERSRRKLQPPQHIPPQQVVH
QPPMQLRQPTPPPSPPPELSFPLPDTPKQSPPDMDEDPEGAGVSVRPPPGGLQRQDSDSS
SRSSSPEPRAKRRPGPLSLLARKMASEGAYGKRGEDAPADSQTGPRGEASRPGDGVGSSP
GAGAGPVVEVVMFPGAAITHTGGSTGHTGFVTVPEVPAPVVMFGSGAQSHPLPLLSVTAV
PSITLTTEPHGPSGETAQKKTEKETKLAEEKERKMKQVVKEEESHLPPWQRGRDLTLPSA
SSQFGSGGSEEPVMDQGDTPKKSPSGRDKPLSSASGSAMTTTTSPPAIAPKKSRMFSDTS
SGSMTSPPKPVQQGSVVVTTPGELPEPHCISVRPQAVLVSGAQQHTDDTMEVTALNKVSV
EKPGWKAGGDDEKMEKERDRMAQKERASQAEKERASQAEKERASQAEKERASQAEKERAS
QAEKERASQAEKERASQAEKERASQAEKERASQAEKERACLAEKERASLAEKERASLAEK
ERASRAEKERASRAEKERASLAEKERASLAEKERASLAEKERASLAEKERASLAEKERAS
LAEKERASLAEKERASLAEKERASQGEKERASQGEKERASLGEKERASQGEKERASQGEK
ERASQEKGTSKPGETRRRGPEETVEVEPMGPVLPPSYPGKGEDERKGKEDERMRRKEDER
KKEAERGRRGERVRHRRSSPSSGGDSSSSDSGSSSSHSSGSTSSQDKKKKTGTGKGRGDE
KRRLYKGGEKKQTAREVKQSSLSEPSGPMEVERPDPGQTQPTPVGGPQNSEGCMEESTTP
KAFAARKISLTTGSKTSPEGAAAAGGEAESGTAAGRKRRWGSSTAVNAKKPSISITTDSL
KSLIPDIKPSQDAVVDLHPDDIQLSGDEDTTREDQGLDKGLKIRRTVTQVVPSENQENGQ
GEQDEEEEEEEEEEKKQEHDRERAQKEKRKDSEDTMESQSSATHDTDAKKVTPSDTLVRR
SISQQKSGVSVTIDDPVRTAKQPSPPRGKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVE
DGFWIDKIKSHCYVTYSSTEEAVATRAALHGVKWPQSNPKVLSVDFCEQNELDFHRGLLA
VDPREEHRPQPGVGPGGPKVRPGVLPPLMDGRGDRGVVGGVRDQWAEREREMERRERTRA
EREWDRDKVRDFGGKPGEERERGRRSRSLDRERRRKERDGREKKTDKKDEPPAKLLDDLF
NKTKAAPCIYWLPLTEEQANQRGKEREERQKERERRRKEQQDEEDKKREEERKERIKSRE
KEGGAAVSTGSVSVRGSEGERERGREREGEKRRDSGGFRPRGPDPKPSAGFRRSRSRSNP
RDKRR
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctgaatggtaaacctctacaatcgctccgtgtggcagac
ttgaaagcagctttggagcaacgatgcctccctaaaagcggggcgaaaaatacactcatt
aagcgactgaaaggggctctaatgttggagaatcttcagaggacctccactccccatatt
gggctccagccgaactcccagattggggaggagatgagccaaaacagctttataaagcag
tacctggctcagcagcaggagctcctccgccagaggctggagagagaggccagggaggca
gccgaggccgacgaaagcccagcaggccccgaggaggaggagcacacagaggagggcaac
gacagcgattcctataaccctgacaagcatcgccccatgccctcccagcccccactgacc
cgagctgaggaagagggtggaggagggccaatgatgatggggcaccagggccaagggatg
atgatggggcaccagggccaaggaatgatgatggggaaaggccaggggatgatgggccaa
gggatgatgtctcgcagaccagactttggcccaggctctgtgcctcaggagtctcctgac
gcccccggaggtcctggatcctggatgcagcagcgtccctccctccaacatggcctccac
cacgaggagcccaccaccccctccccgccccgagctgtggcctccctctcggtgcgcgtc
ctaggggaccctgagcgccagggcctgcccccgtccatgcccccccgcgcccagacccag
gagaaggaaggcaccgccccagcggatgacgaccggcccgcccactctgtgctccacctc
agccgctccgcccgtgcagcagctggcagtaaccgtgtccaggaagactgtgacgatgat
gatgacagcagtgaggaggatgaagatgagtggggacctgcggcgaggagaggtggcgga
agagggttagcccctcccccccatctccagcagccttcccccagcgtgccagcggcccga
gagagatccagacgcaagctccagcctccgcaacacatcccccctcagcaggtagtacac
cagccccccatgcagctccgccagcccaccccgcccccctctccacccccagagctctcc
ttcccccttcccgacacccccaaacagagcccgcccgacatggatgaggatccagaaggg
gctggggtgtccgtccgcccccctccaggtggtctccagaggcaggactctgactccagc
tcccgatccagcagcccagagccccgagccaagcgccgacccggacccctctccttgctg
gcccgcaagatggcgtccgagggagcttacgggaagagaggcgaggatgcgccggcggac
agccagacaggtcctcgaggggaggcttccagaccaggagatggagttggcagcagccca
ggagctggagcaggaccggtggttgaggtggtcatgttccctggggctgctatcacccac
acaggaggcagcacagggcacacgggattcgtcactgtacctgaggtccctgcaccagtg
gttatgtttggatcaggagcccagtcccatcctctccctctgctgtctgtgacagctgtc
cccagcataaccctcacaaccgagccccatggtccatctggagagacggcacagaagaag
acagagaaagaaacaaagctggcggaggaaaaggagaggaagatgaagcaggtggtgaag
gaggaggagagtcacctgccgccatggcagcgtggacgtgacttgacgcttccatctgcg
tcttcacagtttgggtctggggggtcagaggagcctgtgatggaccagggagacaccccg
aaaaagtcaccctccggcagggacaaacccctctcctctgcttccggctcagccatgacg
accaccacctccccacctgccatcgcccccaagaagtcccgcatgttctccgacacctcc
tccggctccatgacctcccctcccaaacctgtgcagcaggggtctgtggtggtgaccacc
ccaggggaactccctgaaccccattgcatatctgtgagaccccaggcagtccttgtctca
ggggcacagcagcacacagacgacaccatggaggtcaccgcactgaacaaggtgtccgtg
gagaagcctggatggaaagctggaggagatgatgagaagatggagaaggagcgtgacaga
atggcacagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcggagaag
gagcgtgccagccaggcggagaaggagcgcgccagccaggcggagaaggagcgcgccagc
caggcggagaaggagcgcgccagccaggcggagaaggagcgcgccagccaggcggagaag
gagcgcgccagccaggcggagaaggagcgcgccagccaggcggagaaggagcgcgcctgc
ctggcggagaaggagcgcgccagcctggcggagaaggagcgcgccagcctggcggagaag
gagcgcgccagccgggcggagaaggagcgcgccagccgggcggagaaggagcgcgccagc
ctggcggagaaggagcgcgccagcctggcggagaaggagcgcgccagcctggcggagaag
gagcgcgccagcctggcggagaaggagcgcgccagcctggcggagaaggagcgcgccagc
ctggcggagaaggagcgcgccagcctggcggagaaggagcgcgccagcctggcggagaag
gagcgcgccagccagggggagaaggagcgcgccagccagggggagaaggagcgcgccagc
ctgggggagaaggagcgcgccagccagggggagaaggagcgcgccagccagggggagaag
gagcgtgccagccaggagaaggggacttctaaacccggggagaccaggagaaggggacct
gaagagactgttgaggttgagcccatgggacctgttctacccccttcttatccaggtaag
ggagaagatgagaggaaggggaaggaagatgagaggatgaggaggaaggaagatgagagg
aagaaggaagcagagcgaggcaggcgtggggagagggtgaggcacaggaggtcatctccc
tctagtggtggcgactcttcatcctcggactctggatcctcttcgtcacattcctctggc
tccacctcctcccaggacaaaaaaaagaagactggcacaggaaaaggaagaggggatgaa
aagagaagactgtacaaaggaggagagaagaaacaaactgccagggaggtaaagcagtct
tccctgtcagagccatctggccctatggaggtggagaggccagacccaggccagacccag
cccacccctgtcgggggcccacagaacagtgagggctgcatggaggagagcaccactcct
aaagcgttcgctgcacgcaagatctccttgaccacaggcagtaagacgtctccggaggga
gcagcagcagcagggggggaggcagagtccgggaccgctgctgggaggaagaggaggtgg
ggatccagcacggctgtcaacgccaagaaaccatccatcagcatcaccacagactcactc
aagtctctgatcccagacatcaagcccagtcaggatgctgtggtggatctccaccctgat
gacatccagttgtctggggacgaggacaccaccagggaggaccagggcctggacaagggc
ctcaagatcagacgcactgtcacacaggtggtcccaagtgaaaaccaggagaatggccag
ggagaacaagatgaagaggaagaggaggaggaggaggaggagaagaaacaggagcatgac
agagagagggcacagaaagagaagaggaaggactcagaagacaccatggagtctcagtcc
tctgctacgcacgacactgatgctaagaaagtcactcccagtgatacgctggtgcgtcgc
tccatcagccagcagaagtcaggtgtgtctgtcaccatcgacgacccggttcgcaccgcc
aaacagccctctccgcccagaggcaaagtctccaacatcgtccacgtctgtaacctggtg
cgacctttcaccctgggtcagctgaaggagctgctgaacaggacaggctcagtggtagag
gatggcttctggatcgacaagatcaagtctcactgctacgtcacttactccagcacagag
gaggctgtggccacacgagctgcgctccacggggtgaagtggccccaaagcaaccctaag
gtcctcagtgtggacttctgtgagcagaacgagctggactttcacagaggcctactggcc
gtggatcccagagaggagcaccgcccccagcctggtgtgggtcctggaggtcccaaagtc
cgaccgggcgtgctgccccctctgatggacgggcgcggggaccgcggcgtggtcggaggg
gtgcgggaccagtgggcggagagagaaagggagatggaacgccgggagaggaccagggcg
gaacgtgagtgggaccgggacaaggttcgagacttcggaggcaaaccaggagaggagagg
gagagggggaggagatctcggtccctggatagagagagaaggcggaaggagagggacggc
agggagaaaaagactgacaaaaaggatgagcctcctgccaaattactagacgacctcttc
aataagaccaaagcagctccctgtatatactggctccctctcactgaagaacaggcaaac
cagaggggaaaagaacgggaagagcgacagaaagaacgagagaggaggcggaaagaacag
caggatgaggaggacaagaagcgagaggaggagagaaaggagagaattaaaagcagagag
aaggagggaggagctgcggtaagcactggaagtgtgagtgtcaggggatctgagggagaa
agggagcgtgggagggagagagagggggagaagaggagggacagtggtggattcagaccc
agaggtcctgatcctaaaccctctgctgggttccgacgttcccgtagccgtagcaacccc
cgagacaaacgccgttga
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integrated database retrieval system
