Oncorhynchus masou masou (cherry salmon): 135516389
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Entry
135516389 CDS
T10723
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03020
RNA polymerase
omm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135516389
09124 Replication and repair
03420 Nucleotide excision repair
135516389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135516389
03400 DNA repair and recombination proteins [BR:
omm03400
]
135516389
Enzymes [BR:
omm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135516389
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135516389
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135516389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
135516389
NCBI-ProteinID:
XP_064796735
LinkDB
All DBs
Position
27:complement(51695129..51720880)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVDQQEHDSEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPK
FSRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKE
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASSHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGM
FFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS
PSYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcacagaagggggaatcaag
taccccgagaccacagaaggaggacgtcctaaacttggtgggctgatggaccccagacaa
ggggtcattgaacgatccggaaggtgtcaaacatgtgcaggcaacatgacagaatgcccg
ggccacttcggccacatagagctggcgaagcctgtcttccacgtgggtttcgtcaacaag
atcatgaaggttctccgatgtgtctgctactcgtgctccaagcttctggtcgacacgaat
aacccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtacgacctgtgtaaaggcaagaacatctgcgagggcggagaggagatggacaac
aagtttggagtggaccagcaggagcatgacagtgaggacatcactaaggagaaggggcac
ggtggctgtggacgctaccagccgcgtatccgccggtcgggcctggagttgtacgccgag
tggaagcacgtgaacgaggactcgcaggagaagaagatcctgctgagcccagagcgcgtc
tacgagatcttcaagcgtatctcggacgaggaggatgtcatcctgggcttggaccccaag
ttctcccggcccgagtggatgatcgtcacagtactccccgtgccgccactggctgtccgg
cccgccgtcgtcatgcagggctctgctcgtaaccaggacgacttgacacacaagctggcc
gacatcgtcaagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccac
gtcatcgccgaggacgtgaagctgctgcagttccacgtggccaccatggtggacaacgaa
ctgccaggcctgcccagggcgatgcaaaaatcgggccgcccacttaaatccctcaaacag
cgtctgaaggggaaggaggggcgagtccgaggtaacttgatggggaaacgtgtggacttc
tccgcccgaaccgtcatcacccccgaccccaacctccagatcgaccaagtgggtgtccca
cgctccatcgcagccaacatgaccttcccagaaatcgtcacaccctttaacattgacagg
ttacaggagttggtgcgcagaggcaacagccagtaccccggagccaaatatatcatccgc
gacaatggggacagaatcgacctgcggtttcaccccaaaccaagtgaccttcacctgcag
attggctacaaggtggaaagacatatgtgcgacggtgacatcattatcttcaacagacag
cccacgctacataagatgtctatgatggggcacagagtccgaatcttgccctggtccacc
tttcgaatgaacctcagtgtaaccaccccgtacaatgctgactttgacggggatgagatg
aacctgcatctaccccagtccctggagacgagagctgagatccaggagcttgccatggtg
cctcgtatgatcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacacc
ctcaccgcggtgcgcaagttcaccaagagggatgtcttcctagagcggggcgatgtgatg
aacctcctgatgttcctgtccacgtgggacggcaaggtgccccagccagccatcctgaag
cccaggccactctggacgggcaagcagatcttcagcctcatcatcccgggccacatcaac
gccatccgaacacacagcacccatccagatgaggaggacagtgggccatacaaacacatc
tcccctggggacaccaaggtgatagtggagaacggagagctgatcatgggcatcctgtgt
aagaagtccctgggtacctctgctggctccctggtccacatctgtttcctggagatgggc
cacgacgtcacccgcctcttctactccaacatccagacggtggtcaataactggctgctc
attgagggtgcctctattggtattggtgattctattgctgacgcaaagacttaccttgac
attcagaacaccatcaagaaggccaagcaggatgtgatagaggtcattgagaaggcccac
aacaacgagttggagcccacccctggtaacacgctgaggcagacctttgagaaccaggtg
aatcgcatcctgaatgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggccggctccaaaggttccaagattaacatc
tctcaggttattgctgtggtggggcagcagaacgtggagggtaaacgtatccccttcggc
ttcaagcaccgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggc
ttcgtggagaactcgtacctggctggcctcacgcccacagagttctttttccacgccatg
ggaggcagagaggggcttattgacacggctgtgaagaccgccgaaactggttacatccag
cgtcgtctgatcaagtccatggagtctgtgatggtgaagtacgacgccaccgtgaggaac
tccatcaaccaggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtg
gagttccagaacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagg
tttgactgcaccaatgagcgagcgctgcggcgcaccctgcaggaggacgttgtgaaggac
gtgatgaccaatgcccaggtgcagagtgccctggagagagagtatgagaagatgaaggag
gacagagagattctgagggccatcttccccactggggacagcaaggtggtgcttccatgc
aacctggccaggatgatctggaacgcccagaagatcttccggatcaacccccgcaccccc
acagacctcaacccccttcgagtggtagagggtgtccaggagctgagtaagaagctggtg
atagtgaacggcgaggaccacctgagcagacaggcccagcagaacgccactctgcttttc
aacatccacctgcgctccacgctcagctcccgacgcatgacagacgagttccgactgagt
actgaggcttacgactggctactgggggagatcgagagcaagttcaaccagtctattgcc
cacccgggtgagatggtgggggcgttagccgcccagtcgctgggagaacccgccacccag
atgaccctgaacaccttccactacgctggtgtgtcggccaagaacgtcactctgggcgtg
ccacgtctcaaggagttgatcaacatctccaagcggcccaagaccccctccctcaccgtg
ttcctgctgggccaggcggcccgcgacgcagagagggccaaggatatcctctgtcggctg
gaacacaccaccctcagaaaggtgacggccaacacagccatctactacgaccctaacccc
cagagcacggtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcccgac
tttgacgtgactcgcatctctccctggctcctccgcatcgagctcgaccgcaaacacatg
actgaccgcaagctgaccatggagcagattgcagagaagataaatgcaggtttcggagat
gatctgaactgtatcttcaatgacgacaacgccgagaagctggtcttgcgaattcgcatc
atgaacagcgacgagaacaagttccatgaggatgaggaagtggtggacaagatggacgac
gacgtgttcctgaggtgcatcgagtccaacatgctgacggacatgacactgcagggcatc
gagcagatcagcaaggtgtacatgcacttgccccagaccgacaacaagaagaagatcatc
attacagaggagggagagttcaaggccctgcaggagtggatcctggagacagatggcgtg
ggactgatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaacgat
attgtagagatcttcacggtactgggtattgaggctgtacgtaaggcgctggaaagggag
ttgaaccacgttatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctt
tgcgacaccatgacgtgccgcggtcacctgatggctatcacacgtcatggcatcaacaga
caggacacgggacctctcatgaagtgctcctttgaggagacggtggatgtgctgatggag
gcgtcatcccacggggagagtgaccctatgaagggtgtgtctgagaacattatgctgggc
cagctggccccctgcgggacgggctgcttcgacctgctgctggacgctgagaagtgcaaa
tacggcatggagatccccaccaacatccctgggatcagtgtggctggacccaccggaatg
ttctttggctctgcacctagccccatgagtggaatgtcccctgccatgaccccctggaac
actggagccacccccgcctatggtgcctggtcccccagcattggtagtgggatgactccc
ggagcagcaggcttctctcccagcgcagcatccgacgccagtggcttctctccgggctac
tccccggcctggtcccctacccctggatctcctgggtccccgggaccagccagcccctac
atcccctctccaggaggtgcgatgtctcccaactactcgcccacctccccggcctacgag
ccccgctctcctgggggatacaccccccaaagcccgggctactccccaacctccccctcg
tactccccaacctccccctcgtactcccccaccagccccaactacagccccacctccccc
tcctactccccaacctccccctcctactccccaacctccccctcatactccccaacctcc
cctagttactcccccacgtccccctcctactccccaacctccccctcgtactctccaacc
tcccctagttactcccccacatccccctcttacagccctacatccccaagctacagccct
acgtccccaagctactcccccacctcacctagctattcccccacctcaccctcctactcc
cctacctcaccctcctactcccctacctcaccctcctactcccctacctcaccctcctac
tcccccacctcaccctcttactcccccacctctccaagctacagcccctcttcacccaac
tacacccccacctccccctcctactcccccacctccccctcctactcccccacctcccca
aactacacccccaccagccccaactactccccaacctccccctcttattcccccacctcc
ccatcctactctccctccagcccacgcttcaccccccagtcacccacctacacccccagt
tctccctcttacagccctagctcgccctcctactcacccacctcgcccaaatacacccct
acgtccccctcatactcccccagctctccagagtacacccccacctcccccaaatactcc
cccacctcgcccaagtactctccgacctctcccaaatactcacccacctccccaacttac
tcaccgacgacgcccaagtacagccccacttcacccacctactcacccacctcgcccacc
tacacccccaccagccccaagtactcccctacctccccaacatactctccaacctcaccc
aaatactctcccacctcccccacctactcaccaactagccccaaagggtccacatacagc
cccctatctcctggctacagcaacccctcgcccagcttcaccctcaccagcccggccatc
agcccagatgacagtgacgaggagaacaactga
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integrated database retrieval system
