Oncorhynchus masou masou (cherry salmon): 135516511
Help
Entry
135516511 CDS
T10723
Symbol
cnga1b
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide-gated channel rod photoreceptor subunit alpha
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
135516511 (cnga1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omm04040
]
135516511 (cnga1b)
Ion channels [BR:
omm04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
135516511 (cnga1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
Pox_Ag35
Sec62
PAP2_3
CDC45
Tim54
NPR3
GrpE
DUF5427
Motif
Other DBs
NCBI-GeneID:
135516511
NCBI-ProteinID:
XP_064796930
LinkDB
All DBs
Position
27:64380476..64420653
Genome browser
AA seq
713 aa
AA seq
DB search
MSVKVTPVTPAGSAHPQPCSPPLIVLQDMEGETEERGEVHRCLRSSVVQVPFNMNNSNSN
EEEEQKKKTSKKERKEKKERKDKKEXGPEQKKKEKEEKELKEKEEKEKKEKEEKAKAEAP
KEITVIDPAGNMYYNWLLVITIPVMYNWTLIIARASFEELQTDFLIYWFIIDCVSDVVYL
ADMVFRTRTGYLEQGLLVKDQKKLIDRYINSLQYKLDLISMIPTDIFYVYFGLNYPEIRL
NKLFRINRMLEFFQRTETRTNFPNVLRISNLVMYIVIIIHWNACLYYSFSKAIGFGANKF
VYPDTTDPEFGRLVRKYAYSMYWSTLTLTTIGETPPPVQNSEYFFVVTDFLVGVLIFATI
VGNVGSMITNMNAARANFQARIDAIKQYMTFRKVTKDLEKRVIKWFDYLWTNKKAVDERE
VLKFLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDI
GREMYIIKEGKLAVVADDGIKQFVVLSDGSYFGEISILSIKGSRAGNRRTANIRSVGYSD
LFCLSKDDLMEALSEYPDAKAMLEEKGRQILMKDNLLDLEVAAQGPDPKDMEEKVERMTA
TLESLQTRYARLLAEHEAGQSRLKRRVTRLEKKVMGGGEEEMGEGEEEMGEGRTLQLSHS
YSLLTEERTWQHLHNTPRRANPSLRRSGSPTRLLLSDWFRASTAPPQTMMSMI
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgaaggtgacccctgtgacccctgctggctccgcccacccccagccctgctct
ccgccactcatcgttctgcaggatatggagggggagacagaggagaggggcgaggtacac
aggtgtttaaggagctccgttgtgcaggttccattcaacatgaacaacagcaacagcaac
gaggaagaggaacagaagaagaagacaagtaaaaaggagaggaaagagaagaaggagagg
aaagacaagaaggagtaaggaccagaacagaagaagaaggagaaagaggagaaggagttg
aaggagaaagaggagaaggagaagaaggagaaagaggagaaggccaaagctgaagcgcct
aaagagatcacggtgatagacccagctggtaacatgtattataactggctcctggtcatc
accatacctgtaatgtacaactggaccctcatcatagccagggccagttttgaggagctc
cagacagactttctgatctactggttcatcatagactgtgtctctgatgtggtctacctg
gcggatatggtgttcaggaccaggacaggttacctggaacagggtctgttggtgaaggat
cagaagaagctgatagatcgctacataaacagtctccagtacaaactagacctgatctcc
atgatccctactgacatcttctatgtgtacttcggactcaactaccccgagatacgactc
aacaagctgttcagaatcaacaggatgttggagttctttcagaggacagagacaaggacc
aacttccccaacgttctgcgtatctccaacctcgtcatgtacatcgtcatcatcatacac
tggaacgcttgtctttactactctttctccaaggcgattggtttcggagctaataagttt
gtgtaccccgacacgacggaccctgagtttggccgtttggtccggaaatatgcctacagc
atgtactggtcgaccctgacactcacaactatcggagagactcctccccctgtacagaac
tctgagtacttcttcgttgtcacagacttcctggttggcgtgttgatctttgctaccatc
gtcggtaacgtcgggtccatgatcaccaacatgaacgctgccagggcaaacttccaggcc
aggatagatgccatcaagcagtacatgactttcagaaaggtcaccaaggacctggagaag
agggtgatcaagtggtttgactacctgtggaccaataagaaggcagtagatgagagggag
gtgctgaagttccttcctgataaactcagggctgagatcgctatcaacgtacacctggac
acactgaagaaggtgcgtatctttgctgactgtgaggctggtctcctggtagagttggta
ttgaagcttcagcctcaggtctacagtccaggtgattacatctgtaagaagggagacatc
ggacgagagatgtacatcatcaaggaagggaagctggccgttgtcgccgacgacgggatc
aaacagttcgttgtccttagcgacgggagctacttcggggagatcagtattctgtccata
aagggttccagggctggaaacaggaggactgctaacatcaggagtgttgggtactccgac
ttgttctgcctgtcgaaagacgacctcatggaggccctgtcggagtatcctgatgctaaa
gccatgttggaggagaagggacggcagatcctaatgaaggacaacctgctggacctggag
gtggcggcgcagggcccggaccccaaggacatggaggagaaggtggagaggatgacagca
acgctggagtccctccagacgcgatacgcccggctcctcgccgaacacgaggcgggccag
agcagactgaaacgcagagtcacccgactagagaagaaagtgatgggagggggagaggag
gagatgggagagggagaggaggagatgggagagggaagaacactacagctctcacacagc
tacagtctgttaacagaggaaagaacatggcagcaccttcacaacacaccgcgtcgagcc
aatccaagtttgaggagatcaggaagtccaaccaggctgctgctcagcgattggttcaga
gccagtacagctcctcctcagacgatgatgtcgatgatatag
DBGET
integrated database retrieval system
