Oncorhynchus masou masou (cherry salmon): 135517235
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Entry
135517235 CDS
T10723
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135517235
mRNA degradation factors
3'-5' decay
Pan complex
135517235
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135517235
NCBI-ProteinID:
XP_064797422
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Position
28:14864506..14884510
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AA seq
825 aa
AA seq
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MNSGLPASAAPLGGVGIPCVKVKFCRYYAKDKTCFYGDECQFLHEEPSMASMSLHSGASP
VPLSMSGGAVTYPLSAPPACPVGVPNVSKKGDSLGPAGTVLEGQMLTIPGMEGGTLSDAN
LTNSYFSSSFIGVNGFGSPAESKYSIMQRITNSSSSPSLLDDGAKNFSHSAHDLFHGTLA
AGPGQSCGSMENSPWTTQSSFPLCPLPEPGNSPMSSLFSDFGALSISQRRKGPNPTANEF
IPKGVPRMATMVQPSGPAFPSPLFPHLGLSSSTALAPGMSLSAGSTPLHSPKITPQTSPA
PRRRSHTPNPNNPNPANYMVSTSVSDQGAHIIQKETVGGTTYFYTDNTPAPMAGMVFPTY
HIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQLDQSENTGVPSEVDSYHS
LFPLEPVPPPNRLQKTSNFSYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWK
KIQHSNAVTLREVFTTKAFGDHSLVFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQHE
PTPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGV
FDVLTFDNSQTNHVTLMPQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVSINYS
SDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFR
LLAKLGTINERPEFQKDHTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIVSCLNKL
DAGVPEKISLVSRDEKSVLVVTYSDLKRCFDNTFQELQQAAVGPL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccacttgggggtgtcggaataccctgcgtc
aaggtgaagttctgccgatactacgcaaaggataagacttgcttttatggggacgagtgt
cagtttttgcatgaggagccgtctatggcaagcatgtcccttcacagtggagcaagtcct
gtccctttatccatgtctggaggagccgtgacgtatccgcttagtgcacccccggcctgc
ccggttggagtaccgaacgtctccaaaaagggcgactctctggggcctgcaggcacggtt
ctggagggacagatgttaaccatccctgggatggagggcgggaccctgagcgatgccaat
ctgaccaactcctacttcagcagcagcttcattggggtcaatggcttcgggagcccggca
gagtctaaatactctatcatgcagagaatcaccaacagcagcagttctcccagtctcctt
gacgacggtgccaagaacttcagccacagcgctcacgatctattccatggaaccctggca
gctggaccaggtcagagttgtgggtcgatggaaaactctccgtggacaacacagtcttca
ttccctctatgtcctcttccagagccagggaattcccccatgtcttcactcttcagtgac
tttggtgctctgagcatatcacaaaggagaaagggtcctaaccctacagccaatgagttc
atccctaagggggttccccgcatggccactatggtccagcccagtggtccggccttccca
tcgcccctctttccccacctcggcctcagcagctccaccgcactcgcacctgggatgtct
ctctctgcggggtccacccccctccactcccctaagatcaccccccaaacctcacctgcc
cctcgccggcgtagccacacccccaaccccaataaccccaacccagccaactacatggtg
tccaccagtgtgtctgaccagggggcccacatcatccagaaggagacggtgggggggacc
acctatttctacacggataacacccccgctcccatggccgggatggtgtttcctacctac
cacatctaccctcccactgctccccacgtggcctacatgcagcccaaagccaacgccccg
tccttcttcatggctgatgagctccgacaggagctgattaacagacatctgattaccatg
gctcagcttgaccagtcagagaacacaggtgttccatctgaggtggatagctaccacagc
ctgttccccctggagcctgtcccccctcccaaccgcctgcagaagaccagcaacttcagc
tacatcacttcctgctacaaggctgtcaacagcaaggacgacctaccgtactgcctgagg
aggatacatggtttcaggctggtgaacaccaagtgtatgatgctggtggacatgtggaag
aagatccagcactccaacgctgttaccctgagggaggtcttcaccaccaaggcctttgga
gatcactcgttggtgttctcctatgacttccatgcgggggcagagaccatgttcagccgg
cacttcaacgaccccgcggctgactcctacttcaccaagaggaagtggggacagcacgag
cccactccaccgcggcagcacgcaggtctgctccccgagtctctgatctgggcctacatc
gtccagctgagctcggccctcagaactatccacactgctggtctggcctgcagggtcatg
gaccccagcaagatcctcatcaccggcaagaccaggttacgagtgaactgtgtcggggtg
tttgatgtcttaacatttgacaacagtcagaccaaccatgtgaccctcatgccacagtac
cagcaagcggacctgatatccctgggcaaggtggtgttggccctggcctgtaactctctg
gctggcattcagagagagaacctgcagaaggccatggagttggtgtctatcaactactca
tcagacctcaagaacctcatcctgtatctgttgacagagcagtctaggctgcgcagcgtt
aatgacatcatgcccatgattggagctcgcttctacacacagctggatgcatcacagatg
aggaatgatgtcatcgaggaggacctggcgaaggaggtccagaatggtcgtctcttccgt
ctgttggccaaactgggcaccatcaacgagagaccagagtttcagaaggaccatacgtgg
tctgagacgggggaccggtacctgctgaagctgttcagagaccacctgttccaccaggtg
acagaggctggagccccctggatagacctcagccacattgtttcctgcctcaacaaactg
gacgcgggcgtgcctgagaagatcagcttagtgtctcgggatgagaagagtgttctggtg
gtgacctactcggacctgaagcgctgcttcgacaatacctttcaggagctgcagcaggcc
gctgtcggaccgctgtag
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