Oncorhynchus masou masou (cherry salmon): 135517625
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Entry
135517625 CDS
T10723
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135517625 (rc3h2)
04121 Ubiquitin system [BR:
omm04121
]
135517625 (rc3h2)
Transcription factors [BR:
omm03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135517625 (rc3h2)
Ubiquitin system [BR:
omm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135517625 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4
zf-RING_10
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
135517625
NCBI-ProteinID:
XP_064798178
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All DBs
Position
28:complement(43497410..43516667)
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AA seq
1099 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSNGHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDLLPVNCALLQLVGAQVLESQPVTLSSAVELEHYEVCRVCVEELALYLKPISGGKGVVT
LSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSVG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANI
DHNPDAASPSWDELEGVVLAVKVMVDGLVEFTQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGSNCTFAHTQDELEKYRMRNKKISGVGRPFPLAQGSMGSEGGDSGEEACAGGL
KGSDKVGSGSLTEGSTHPQLIPRGGNMMEEMKRERSVVNGSNGLTGSSRSSSGSLEQKTV
SPPKTPVNHSSAPSPHGPGSRVECGSGHPKQGHFLMRGPSHQPPPHQPQSSELYYQDPRP
PYDTQPYQPASNYYTSTMHHHKPCMARFLRSSHVLESSLPPSMAPPYSEQHSSFPPPRER
VGPSPYGPLPAPQYGPLAPAHGGYAPLYDSRRMWRPQLYHREDARSNSLPPEVLHSSVYQ
PPLRERYASLDSPYCSAGEHRAALHRDSYGRVPLGYEDLFKRKQEQWTHHHHGNMNRPSQ
SSPVFTVDFGAEHDSGGDQCMNCKYRGEERLAHYSPWSCGTISTCISPFEPEHHNASAPS
CSEHSEVDNGERKRWLHTFEPYRRLKDEDPIIPFGEGPIISKWGAISRASRTGYHTTDPV
QATACQGSNSTTPVNFRDYGPHIGHGDYRWSSCGSDSSSHSSFLESDQLGVCELSARERS
FGSGEKAGAGGLLQTDYCKDTTESEPDRDIELELSVLDMEDIDLQDNSQQSEESLELRDP
HLLTPPSSEPQRSQTDKLSADKMEAHLLKKMAFRKSLSPGGLGSGGLSVGKLMMRTGPPR
LGDMGPRPNTGPEMLLNGS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcagcccaatggacagagttcctctcctgccccatctgctacaatgag
tttgacagcaatggccacaagcccatcagtctgggctgctcgcacaccgtgtgtaagacc
tgtctgcacaagctgcaccgcaaggcctgccccttcgaccagacagccatcagcactgac
attgacctcctgcctgtcaactgtgccctgctacagctggtgggagctcaggtcctggag
tcccagcctgtgactctgagcagtgctgtggagttagagcactatgaggtgtgccgggtg
tgtgtggaggagctggctctctatctcaaacccatcagtggaggaaaaggtgtggtgaca
ctcagtccgagcgcgctcagtcgacccatgcagaggaagctggtgacactggtcaactgc
cagctggtggaagaggaggggcgggtacgtgcggtgcgggcaggccggtcactaggggaa
cgtaccgtcacagagctcatcctgcagcaccagaacccacagcagctctctgccaacctg
tgggccgccgtcagggcacggggatgccagttcctggggcctgcgatgcaggaggacgct
ctaaagctggtgttgctggccctagaggacggctcagctctgtccaggaaggtactggtg
ctgtttgtggtccagaaactggaggctaggtttcctcaggcctccaagacctccgtcgga
cacgtggtccagctgctctacagagcctcctgctttaaggtgaccaagcgtgacgaggac
tcgtcgctgatgcagctgaaggaggagttccgtacctacgaggccctgcgccgcgagcac
gacgcccagatcgtgcacatcgccatggaggcggggctccgtatctcacctgagcagtgg
tcctccctgctctacggagacctcatccacaagtcacacatgcagtctatcattgacaag
ctccagtccccagagtcctttgcaaagagtgtccaggagctgacgatagttctacagaga
acaggagaccctgccaacctgaacagcctcagaccacacctggaactactggccaacatc
gaccacaacccagacgcggcgtctccgtcgtgggacgagctggagggcgtggtgctggcg
gtgaaggtgatggtcgacggcctggtggagttcacacagaacttcagtaagaagagccac
gagacaccgcagccgcagcccaacagcaagtacaagaccagtatgtgtcgagacctccgg
cagcagggtggctgtccccgaggatccaactgcaccttcgcacacacacaggacgagcta
gagaaatacagaatgagaaacaagaagatcagtggtgtgggccggcccttccccctagcc
caggggagtatgggtagtgaggggggcgactcaggagaggaggcctgcgctgggggactg
aagggctcagacaaggtgggatcggggtccctaacagaggggtccacacacccccagctc
atccccaggggaggcaacatgatggaggagatgaagagggagaggtctgttgttaacgga
tccaacggactcacaggctccagccgctcctcatctggctccttggaacaaaagactgtt
tctcctccaaagacgcctgtcaaccactcctcagctccttctccccatggtccggggtct
agggtagagtgtggctctggtcatcccaaacaagggcacttcctaatgagaggaccctct
caccagcctcctccccaccagcctcagtcctctgaactgtactaccaggacccccgacct
ccctacgacacacaaccctaccagccagccagtaactactacacctctacaatgcaccac
cacaaaccctgcatggcccgcttcctgcgttccagccacgtcctcgagtcctctctgccg
ccttccatggcccctccgtactccgagcagcactcctcctttcccccaccacgggaacgc
gtgggtccttctccctacggccccctgccggccccccagtacgggcccctggccccggcc
catggaggctacgctcccctgtatgacagtcggcgtatgtggagaccccagctgtaccac
cgcgaggacgccaggagtaactccctgcctccagaggtgctgcactcctctgtgtaccag
ccccccctccgagagagatacgcctccctggacagtccctactgctcggcgggggagcac
agagcagcgctgcacagggactcttatgggcgtgttcctcttggatacgaggatctgttc
aagcggaaacaagagcaatggacacaccatcaccacggcaacatgaacaggccctcccag
tcctcccccgtcttcaccgtagactttggtgcagagcatgacagtggaggtgatcagtgt
atgaactgtaagtaccggggtgaggagcgtctggcccactactctccctggtcctgtgga
accatcagtacctgcatcagcccctttgaaccagagcatcacaacgcctcagctccctcc
tgctccgaacactcagaagtagataatggcgaaaggaaacggtggctccacacatttgag
ccgtaccgccgtctgaaagacgaggatcccatcatcccatttggagagggacccatcatc
tcgaaatggggggctatctcccgcgcctcccgtacagggtaccacaccactgaccccgtc
caggccacagcctgccagggaagcaacagcaccacccccgtcaacttcagagattatggc
ccacacatcggtcacggtgactacaggtggagctcctgtgggtctgactcgtccagccac
tctagtttcctagagagtgaccagctgggagtgtgtgagctttctgcccgtgagcggtcc
ttcggcagtggagagaaggctggtgcaggaggcctgctgcagactgactactgtaaagac
acgacagagagcgaaccggacagagacattgagctggagctgtctgtactagacatggag
gacattgacctgcaggacaacagtcaacaatctgaggagtcccttgagctaagggacccc
caccttctcacccctcccagcagtgaaccccagaggagtcagacggacaagctgtccgct
gacaagatggaggctcacctgttgaagaagatggccttcaggaagtctctctcccctgga
ggtctgggctcgggaggcctcagtgtggggaagctgatgatgagaaccggccctccaagg
cttggggacatgggccctcgccccaacacaggccctgagatgctgctcaacggcagttga
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