Oncorhynchus masou masou (cherry salmon): 135517642
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Entry
135517642 CDS
T10723
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135517642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135517642
03041 Spliceosome [BR:
omm03041
]
135517642
03009 Ribosome biogenesis [BR:
omm03009
]
135517642
03016 Transfer RNA biogenesis [BR:
omm03016
]
135517642
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135517642
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135517642
Spliceosome [BR:
omm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135517642
Complex C
U4/U6.U5 tri-SnRNP related factors
135517642
Ribosome biogenesis [BR:
omm03009
]
Eukaryotic type
Pre-60S particles
Helicases
135517642
Transfer RNA biogenesis [BR:
omm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135517642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
135517642
NCBI-ProteinID:
XP_064798209
LinkDB
All DBs
Position
28:44154499..44206995
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKKKLAVPEKGKSTSKNGKGGKAEFYAAKSKREADNNGTD
EVVFGKRSKLETVSTEEINLADCMPKVRVEPVETVEGCNHEVALPANEEYKQLKPRVGKA
AKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDPKGRKG
GTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN
AIDCLSDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMA
KLEEMYNAIEIPNEESVVTYYKIRQQLAKLSKEIEDFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFSKKSNVKAITGDADPLYVVEVLVHCSKESVKNTATEAAKPAAAGEKGEM
QVVPVMLHLLTSISSVRLYSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSAEQVT
ALLSVFIFQENVNDMPKLTEQLAGPLRQMQECAKRVAKVSAEAKLEVDEDTYLDKFKPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaagaaactagcggtacctgaaaaggggaaatcgaccagtaaaaatggcaaagga
ggaaaggctgagttctatgcggccaagagtaagcgggaagcagacaacaacgggacagat
gaggtggtgtttgggaagaggtccaagctggagacagtttctacagaggagatcaatctt
gcagactgcatgcccaaggtgagggtggagccggttgagacagtggaaggatgcaaccat
gaggtggccctaccagccaatgaggagtacaaacagcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcgttctggatcccttccaacgtgaggccattctgtgtatcgat
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagctctgagggagaagcagagggtcatcttcaccagccccatcaaa
gccctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggcctgatg
accggtgatgtcaccatcaaccccaccgcctcctgcctcatcatgactaccgaaatcctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagagatgccgagcgtggcgtggtgtgggaggagaccatcatcctg
cttcctgacaatgtccactatgtcttcctgtccgccaccattccaaacgccaagcagttc
gctgaatggatctgccaccttcacaaacagccctgtcacgtggtgtacactgacttccgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctgagagac
actggtgactctggaggcagcagcggagggggcaaatgggaccccaaggggcgcaaagga
gggacacgagggccatccaacgtgtttaagattgttaaaatgatcatggagcggaacttc
cagccggtcatcatctttagcttcagtaagaaggagtgtgaggcctatgccctgcaggtg
tccaagctcgacttcaacacagatgaggagaagaagctggtggaggaggtgttcaacaat
gccatagactgtctgtcagacgatgacaagaagctgccccaggtggagcacgtcctgcct
ctattgaagagaggtatagggattcatcatggaggactcctccccatcctaaaggaaacc
atcgagatcctgttctctgaggggcttctcaaggccttgttcgccacagagacctttgcc
atgggcatcaacatgcccgcccgcactgtcctgttcaccaacgcacgcaagtttgatggc
aaagacttccgctggatcacgtctggtgagtacatccagatgtccggtcgagctggcagg
agagggatggatgagaggggtatcgtcatcttcatggtggatgagaagatgagccctgca
attgggaaacagctgcttaagggctcggcagaccctctgaacagtgccttccacctcacc
tacaacatggttctcaacttgctgcgggtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggggtcgtagagaagatggcg
aagctggaagagatgtacaacgccatagagatccccaacgaggagagtgtggtgacctac
tataagatccgccaacagctggccaaactgagcaaggagatagaggacttcatccacaaa
ccaaaatactgtcttcccttcctccagcctggcagactggtcaaggtcaaaaacgaagat
gctgactttgggtggggtgtggttgttaatttctcaaagaagtcaaatgtcaaggccata
acgggtgacgcagaccctctatacgtggtagaggtgctggtccactgcagtaaggagagt
gtgaagaacacggccacagaggctgccaaacccgctgccgctggggagaagggtgaaatg
caggtggttcctgtgatgctccacctcctgacctccatcagttcagttcgtctctacagc
cccaaagacctgcggccttatgacaacagacagagcatgctcaaatccatacaggaggtg
cagaagaggttcccggacggcgttccccttctggaccccatcgatgacatgggcattaag
gacccgggcctgaagaaggtcatccagaaggtggaggcgtttgaacacaggatgtactcc
caccccatgcactctgaccctagcctggaggccgtctactccctctgcgagaggaaagcc
ctgattgcgggggatatcaaaggggccaagcgggagctgaagaaggctcgaaccgtgctg
cagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctcgggtttgccacttcc
tcggatgtcatcgaaatgaagggccgagtggcctgtgagatcagcagtgctgatgagctt
ctactgactgagatggtgttcaacggcctgttcaacgatctgtctgcagaacaggttacc
gctctactcagcgtcttcatcttccaggagaacgttaacgacatgcccaagctgacagag
cagctggctggacctctgagacagatgcaggagtgtgccaagcgcgttgccaaggtgtct
gcggaggctaagttggaggtggatgaggacacctacctggacaagttcaagcctcacctg
atggacgtggtttacacctgggctaacggctccaccttcgcacagatctgcaagatgacc
gacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctccgtcag
atgtgtcaagcagccaaggccatcggtaacaccgagctggagaacaagtttgcggagggt
attacgaaaatcaagagggatattgtgtttgctgccagtttatatctgtga
DBGET
integrated database retrieval system
