KEGG   Oncorhynchus masou masou (cherry salmon): 135518152
Entry
135518152         CDS       T10723                                 
Symbol
wdr33
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33
  KO
K15542  polyadenylation factor subunit 2
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:omm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    135518152 (wdr33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:omm03019]
    135518152 (wdr33)
Messenger RNA biogenesis [BR:omm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     135518152 (wdr33)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_Gbeta WDR55 Beta-prop_IFT140_1st EIF3I Beta-prop_Aladin Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT122_1st eIF2A Beta-prop_Vps41 Beta-prop_SCAP WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_WDR11_2nd Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 135518152
NCBI-ProteinID: XP_064799149
LinkDB
Position
3:48321170..48362397
AA seq 1085 aa
MATDTSSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRHLENRLWQRDHRDFRAIQPDAGCYNDLVPPVGILSNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWN
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDMEPNSLAAIPGMGIPDQLKAAMEQEASDKETAAEEEMSIPGLDWGIEE
ILQKDQKKVPQKKVPYAKPIPAQFQQAWADNKVPLVPPGGEKKERMDEKKMDGKTNTNPM
MLEQMKMDRMNQMDGNMPPPGGPQGPMPPFPGQGGTMPPPPQGFPQSMPPQQMPHNMGPP
MGPGVMQAPFMRPGQMGPPPGSQHHQGPPQGMMGPPDLHGPQGMQRHPGPHRNMGPQGPH
GMPPGPRGMQGPPGNMQGPPPGGMMGPPPRGQGPPPQGGMMPPQGNMMGPQGPMQGGVGM
GPPMQNPPRTHGNMPGMGGMHGMGNMQGPPPGGMHGPPPGNMQGPPGNMQGPPGNMQGPP
GNMQGPPGNMQGPPSYMQHQVGQNTGPMMHGMGQQGPNGKDTRGPPXHHMGPPPGGQGQG
GPGGPDQGSGSYWGDSQQGRRSNDFNEGGQDFHGRGEESWRRGSSQEYQGGHRGGGQGGG
GGNGGNWGSSEERFPRDGGEFRGRRDDRYRGVGQGRPGGRGFPDDFGGQEENFDTSNEMA
GGWDNGGRGRPPRGGGPPRGGGHEAYREGQRSEHGPLHDSPSPASRERSSSLQGMDMASL
PPRKRPWHDGPGTGDQDSPGAGVEDRTTGRPPQREEGGYGPSTRGGRGGWRGAPRGAPRG
GGRGR
NT seq 3258 nt   +upstreamnt  +downstreamnt
atggcgacggacaccagctccccgccacggttcttccacatgccgcggttccagcaccag
gcaccacggcagctcttctacaagcgccccgacttcgcccagcagcaggccatgcagcag
ctcacctttgatggcaagcgcatgcgtaaggctgtcaaccgcaagaccatcgactacaac
ccctcggtcattagacacctggagaatcgtttgtggcagcgagaccacagagatttccgt
gccatccaaccagatgcaggatgctacaatgatctggttcctcctgtgggcatcttgagt
aaccccatgaatgcagttaccacaaagtttgtccgaacttccacgaacaaagtgaagtgc
cctgtctttgtcataaggtggactcctgaggggaggcgtcttgtcacaggagcctccagt
ggggagttcaccttgtggaacggactcaccttcaactttgagaccatcttacaggcccat
gacagccctgtgcgggccatgacctggtctcacaacgacatgtggatgctgacggctgac
cacggcggctacgtcaagtactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggcgattagagaggccagtttctctcctacggataataaatttgccacttgc
tctgatgacggaaccgtacgcatctgggactttctacgctgtcacgaggagagaattctc
agaggtcatggagctgacgtgaagtgtgtggactggcatcccactaaaggcctggtggtt
tcagggagcaaagatagccagcagccaataaaattctgggatcccaagaccggacagagt
ttggccacacttcacgcccataagaacacggtgatggaggtgaaatggaacctgaacggt
aactggctgctgacagcgtcccgcgaccacctgtgtaagctcttcgacatccgcaacctc
aaggaggagctgcaggtgttccggggccacaagaaagaggccacagctgtagcgtggcac
cctgtccacgaaggcctgttcgccagcggaggctcagatggatccctcctcttctggaac
gtaggtgtggagaaggaggtgggcggaatggagatggcccatgagggcatgatctggagc
ctggcgtggcacccgctcgggcacatcctctgctcgggatccaacgaccacaccagtaaa
ttctggacgaggaatcggccaggggacaagatgagggacagatacaatctgaatttgtta
cctgggatgtcagaggatggagtggaatacgatgacatggagccaaacagcttagctgcc
attcctggcatggggatccccgatcagctcaaagctgccatggaacaagaggcaagcgat
aaagagactgcagccgaggaggagatgagcatcccaggtctggattgggggattgaggag
attttacagaaagaccagaagaaggtgccacagaagaaggtcccctacgccaaacccatc
cctgcccaattccaacaggcctgggcagacaataaggtgcctctcgtgccaccgggagga
gagaagaaagaaaggatggatgagaagaaaatggatgggaagacaaacaccaacccgatg
atgctagagcaaatgaagatggaccgtatgaatcagatggacgggaacatgcctccccca
ggaggtccacaaggacccatgccacctttccctggccagggaggaaccatgcccccacct
cctcagggcttcccccagtccatgccccctcagcagatgccccacaacatggggcccccc
atgggccctggcgtcatgcaggctccgttcatgcgtccgggccagatgggcccccctcca
gggtcccagcaccaccaggggcctcctcagggcatgatgggtccccctgacctccatggg
ccccaaggcatgcagaggcaccccggcccccacagaaacatgggcccccaggggcctcac
ggcatgcctcccggacccagagggatgcagggcccccccggaaacatgcagggcccccca
ccgggaggaatgatggggccccctcctcgaggccaggggcctccaccacaggggggcatg
atgccccctcaggggaatatgatgggcccacagggacccatgcagggcggggtgggaatg
gggcctcccatgcagaaccctcccaggacacacggcaacatgccaggcatggggggcatg
catgggatgggcaacatgcaggggccacccccaggtgggatgcacgggcccccaccgggt
aacatgcagggaccccccgggaacatgcagggacctcctggaaacatgcaaggaccccca
ggcaatatgcagggcccaccaggcaacatgcaggggcctccatcctacatgcagcaccag
gttggacaaaacactggccccatgatgcatgggatgggacagcaaggacccaatggcaaa
gatacccgagggcccccanaccaccacatgggtcctccacctgggggccaggggcagggc
ggccctgggggccctgaccagggctctggttcttactggggagactctcagcaggggcgc
cgatccaacgacttcaatgaaggtggccaggacttccacggacggggagaggagagctgg
aggagagggtccagccaggaataccagggaggccacagaggaggggggcaagggggaggg
ggggggaatgggggaaactggggctcttctgaggaaagattcccccgtgatgggggagag
ttccgaggccgcagggacgacaggtacagaggggttggacagggtcgccctggggggagg
gggttccctgatgactttggtgggcaggaagagaactttgacacctcaaatgagatggcc
ggaggttgggacaacggagggagggggagacccccccgaggagggggcccacccagagga
ggaggtcacgaggcatacagagaaggccagcgctccgagcacggcccgctgcacgacagc
ccgtcccctgccagccgtgagcgctcctcctccctgcagggcatggacatggcctcgctg
cccccacgcaaacgcccgtggcacgacggcccgggcaccggagaccaagactccccggga
gcaggggtagaggacaggacaacaggccgaccgccccagagagaggaaggcggctacggc
ccctcgacccgcggcggcagagggggctggaggggggcgccccgcggggcccccagggga
ggagggcgtggccggtag

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