Oncorhynchus masou masou (cherry salmon): 135518185
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Entry
135518185 CDS
T10723
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135518185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135518185
03009 Ribosome biogenesis [BR:
omm03009
]
135518185
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
135518185
Ribosome biogenesis [BR:
omm03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
135518185
Pre-60S particles
135518185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
HEAT_2
TPR_IMB1
Cnd1
TPR_IPO5
Vac14_Fab1_bd
Arm
TOR1L1_N
IBN_N
HEAT_EF3_N
HEAT_MROH2B_C
PDS5
TPR_DNAAF5
Adaptin_N
HEAT_GCN1_C
CEP104-like_TOG
MMS19_C
TTI1
UNC45-central
Ltn1_1st
HEAT_GCN1_C_2
TPR_TTI1_C
Dopey_N
INTS7_N
SCD
RTP1_C1
VPS15-like_hel
HEAT_DAAF5
RRN3
ARM_TBCD
Motif
Other DBs
NCBI-GeneID:
135518185
NCBI-ProteinID:
XP_064799218
LinkDB
All DBs
Position
28:complement(71406500..71455323)
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AA seq
933 aa
AA seq
DB search
MECEWKPDEQGLQQILQLLKESQSPDTSTQRSVQQRLEQLNQYPDFNNYLIFVLTKLKSE
DEATRSLSGLILKNNVKAHYQNFPNGVSDFIKSECLQNIGDSSPLIRATAGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNVMIPKFL
QFFKHSSPKIRSHAIACVNQFIISRTQALMLHIDDFIENLFALATDEEPEVRKNVCRALV
MLLEVRMDRLLPHMHNIIEYMLQRTQDQDENVALEACEFWLTLAEQPVCKDVLCNHLSKL
IPVLVNGMKYSEIDIILLKGDVDEDDDEAIPDNEQDIRPRFHRSRTVAQQHEGDRDGIED
DDDDDDDDDLDDDDTISDWNLRKCSAAALDVLANVFRDDLLLPILPLLKELLFHPEWVIK
ESGILVLGAIAEGCMQGMIPYLPELIPHLVQCLSDEKALVRSITCWTLSRYAHWVVSQPP
DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFNKYQ
HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIAKWNQLKDEDKDLFPLLECLSSVA
TSLQSGFLPYCEPVYQRCVNLVQKTLAQAMLHQSQPDQYEAPDKDFMIVALDLLSGLAEG
LGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG
TNLNPELISVCNNATWAIGEISIQMGECLEIVRKRSHIPAWIHSHECVCYTSLTSLLLPL
SPGAEMQPYVTMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW
CTSLRNIRDNEEKDSAFRGICTMISVNPGGVVQDFIFFCDAVASWVNPKDDLRDMFGKIL
HGFKNQVGEDNWRRFSDQFPLPLKERLAAFYGV
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcgagtggaaaccagatgagcaaggacttcagcaaattctacagcttttgaaa
gagtcccagtctcccgatacgtccactcaaagatccgtccagcaaagattggaacagctc
aaccaatacccagacttcaacaactacttgatattcgtgctgacaaagttgaaatcagaa
gatgaggcgacccgctctcttagtggtctgatcctaaagaacaatgtgaaggcccactac
cagaacttccctaatggagtgtctgacttcattaagagcgagtgtctacagaacattgga
gactcctcgcccctcatccgggccaccgcgggtatcctcatcaccaccattgcctccaaa
ggggagctgcagaactggcctgagctgttgcccaaactctgcctcctgctggactctgag
gactacaacacctgtgagggggcgtttggcgctcttcagaagatctgtgaggactcggca
gagatcttggatagtgacgtgttggaccgtccgctcaacgttatgatcccaaagttcctg
cagttcttcaaacacagcagccccaagataaggtctcatgccatcgcctgcgtcaaccag
ttcatcatcagtaggactcaggccctaatgctgcacatcgacgacttcatcgagaacctg
tttgccctggcgactgatgaggagccagaggtgaggaagaacgtttgcagagctctggtc
atgctgctggaagtccgcatggaccgtctcctaccacacatgcacaacatcatagagtac
atgctgcagaggactcaggaccaggatgagaacgtggctctggaggcctgtgagttctgg
ctgacactggctgaacagcctgtctgtaaggatgtgctgtgtaaccacctctccaagctg
attccggtgctcgtcaacgggatgaagtactccgagatcgacatcattctgctcaagggt
gatgtggacgaggatgatgatgaggccatccctgacaacgagcaggacatcaggcccagg
ttccaccgctcccgtaccgttgcccagcagcacgagggcgaccgcgatggcatcgaggac
gatgacgacgatgatgatgatgatgacctggacgatgatgacaccatctctgactggaac
ctccgtaagtgttcagcagcagcgttggacgtgttggcaaacgtgttcagagatgacctg
ctcctccccatcctgcctctcctcaaagagctcctcttccacccagagtgggtcatcaag
gagtctggtatactggtcctgggggccatcgctgagggttgtatgcagggtatgatcccc
tacctgccagagctcatcccccacctggtgcagtgtctgagtgatgagaaggccctggtg
cgctccatcacctgctggaccctgagtcgatatgcccactgggtggtcagtcagcctcct
gacacctatctgaagccactgatgactgagctcctcaaacgcatcctggactccaacaag
agggtgcaggaggccgcctgcagtgcctttgccactctggaagaggaggcgtgtacagag
ttggttccctacctggcctacatcctggacactctggtatttgccttcaacaagtaccaa
cacaagaacctgcttatactgtacgatgctatagggacgctcgctgactccgttggacac
cacctcaacaagccggagtacattcagatgctgatgcctccactgatagcaaagtggaac
cagctgaaggacgaagacaaggatctgttccctttactagagtgcctgtcgtcagtagcc
acatctctccagagtggtttcctgccctactgtgagcctgtgtaccagcgctgtgtcaac
ctggtgcagaagaccctcgctcaggccatgctccaccagtcccagccagaccagtacgag
gctcctgataaggactttatgattgtggctctggacctgctcagtggactggccgagggg
ttgggcggtaacatcgagcagttggttgcccgtagcaacatcctcacgctcatgtaccag
tgcatgcaggacaaaatgccggaggtgcggcagagctcctttgctctgctgggtgacctg
actaaagcttgtttccagcatgtaaagccatgcatcgctgatttcatgcctatactaggc
actaatctgaacccagagttgatatcagtgtgcaacaatgcaacgtgggcaatcggagag
atatctatacaaatgggtgagtgtctggaaattgtcagaaagaggtcacacataccagct
tggatacattctcatgaatgtgtgtgttacacctccctgacctcccttctccttcccctc
tccccaggggctgagatgcagccctatgtgaccatggtgctgcaccagctggttgagatc
atcaacaggcccaacaccccaaagaccctgttggagaacacagcaataacaattggtcgt
cttggttacgtttgtcctcaagaggtggcacccatgctacagcagtttataagaccctgg
tgcacctctctaaggaacataagagacaatgaggaaaaagactcagcgttccgaggcatc
tgcactatgatcagtgtcaaccctggaggagtggtacaggactttatatttttctgtgat
gcagtggcctcgtgggtaaatccaaaggatgatctgcgagacatgttcggcaagatcctc
catgggttcaagaaccaggtgggcgaggataactggaggcgtttctcagaccagttccca
ctgcctctgaaggaacggctggcggccttctacggggtgtaa
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