Oncorhynchus masou masou (cherry salmon): 135518242
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Entry
135518242 CDS
T10723
Symbol
setx
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135518242 (setx)
5.6.2.5 RNA 5'-3' helicase
135518242 (setx)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135518242 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135518242
NCBI-ProteinID:
XP_064799329
LinkDB
All DBs
Position
28:73544446..73604455
Genome browser
AA seq
2471 aa
AA seq
DB search
MMSMCRWCTSLGDDVAKLLQRYCAVSWLAEDEEAVNEKAALNDDLDKCLECVVAYHRAKE
ELPGLHRRLWELETSRLLDLFSHAAKDAQPAKDLSYVEEDGREIGVSDISPAVYEDRLGV
PLSEVLKYPYLLASPELSEMCVEAICKMEEYNSFRVCSKDPGIYLLLVHPNETVRRWAIG
AARSLGKVDRDDFYDLQDIFTCMFYIVELRIPQNFPDMDTSYDPTTKMTLLQPHLYDSKN
AKNYWLGICMLLTQLDAQAMDSLFLGPDKQANILLCILNALKDEEPSNEMDPFWPVLQCF
MVILDCLGSRFWGQIEPSQAFQAITQSPSYSGELESIRQQTMISRVKTETTYDDDMVTCS
QMVYDSNTKVSKGSRRSRGVDSNVVYEDMSSLVNLLHSDVGQALRVHDSTFLWFIPFVKS
VMDLDEHSVLYITEVVHYLCGEISTDLPKPQVRICDKVTEFFTLILVHIIELHLGSGRMN
MLYYCAPKWVGVLVKCATLPGDAFVHTSEGPVSHSVSSTSSLRVSVPRKASTSRAVPQAC
MHIIRSLLKEGTRLNPNSKCHHFLNLLNKHLRDGQQREWKLIRPEIQELQICLKDYVKMM
MNRPTISTTPPEPLDIEAGPVAPTTPPLQSSNDPSGPSSLAEFNPPIKREGLWYDVEGST
SGGGDFSRVQRGWDINIALVKKEPLTLEEEFVEPTKDSRPNQDNLTSLRADPEKIQVIKS
RLGQLMTKKSKSARARPSVGLSEFGKEKPENLLTSRREEASNLQGISRHPPCLQESMDNV
PLSVLKSNLKGKEGSKYSRDRSKGNSRQFDRPQSPPKSTSDVIVISDDEATLDVGRARRP
ECLSETSQIKNEPDASDQNPSPWRDYDGDMSESQVFEFETQEDMVSAWSNRDSESNMPPE
KPKDDSPVSPTSREPLSSWECDTQPIYDEDIERACQQVEKELEKPKTPPQGLKRAIVVKK
RNLLVDAKPLASKCLSKKPTVVEKRIKEPVKDAPLAVTPPLRKSSSTVRSNRLETETHSS
LTTSAISHKTSLTPAIVPPKKVRKATEPVSTAEKLGLKKKVRKAFDLSQGSRDSVGDLRH
HGATVNVTQAKKSTRQTKRSKVTLTQKTVVKASNNKLFQFLRQSKQALGAGISEKAEPMK
RNPKKIDEIQTPSFVTEEDDEDEDLQCSQQDPARHEEQLTFNRSSQGANEEKPASSNTVS
SVLSNMDRQISPYFQRNDVTPGPSGQVPKSNEGEDYDADWMNLTQMEPTEMEMCTQLEEE
EDFFYTQRDPVDMDIDADSQRPFEDKGGSSDLTWFKQADEGQEAPLATQTFKKPATPPPS
RSNVTHDERLFLKPGMSPMSVKKAKPSTTKIYATSSSRSASLVQEMERTANAPFSASSAP
AGRGRPARPVVPARPVVPARPVVPARPVVPARPVVPGLPVVHAQSPCVRQLPPHPEVGQS
LPLNRLLYKPIAPQPPPKPIPPKQPPPRPEQNLPRPPCLPLRPVQHSNTCSTPQPSTSRH
DAPFQSPIPSPEVGFRFDTNFLVQHILKWTFDMFSNYKQFGIPSEVCEFPLKEVGTSFSS
YDEYYKTFYPLLLTNTFEELAGEWLKNKESGKVVTQNLKVVAHEYSHSVWNVSFTASITA
SDDSRQMFPREEDLVILCLPQNRDAYSWHEPGFLEPQEQFGYVQRSNVCNGDVGQCPTLN
LMIKTLGNVTLAYKQAVRCDVVGSLVSTLREFRAICLLNGSSMCKPLLAPHVSYFQPGPE
VIPSLNLPDYNLDQVRAVRTGLSVIKNQQLTPKICLIHGPPGTGKSKTIVGLLQKLFSEG
VQSMTPPVNRHSVPRRMRVLLCAPSNAAIDNLMKKIIPVFKEKCRNIQGNCGNINLVRLG
NERTISKNLKPFSLDSQVKNKTQRAQMSQDSDIHRRRAQLDENIDKISKMLPKLQKKEEM
YHELAAQKSRMLREREPLSLQLKKSRIRKLETQAQVLQDAHVVCCTLSTSGSTVLESAFR
RLGHKPFSCVIVDEAGQATETETLIPLLYHCNALILVGDPHQLPPTVISQKAKELNYGQS
LMARLVKNLDRYCKENKTPSPVVFLSYQYRMHPEICEFPSKHIYCKALKTDSETAERRGN
FGWPLLPYRVFDVTDGQEVKEGASFSNLKEVQLVVFLLRLMAEKQQVKVGVITPYNAQKD
RINREMAKVDNKNLTVDVDTVEGFQGREMDCVIVSCVRASHEQGGIGFLGNRQRLNVTIT
RAKFSLFILGHLRTLQENQDWGALIKDAATRDVIISTNEMNFKTDARKIFKKELTRSSSY
PLREPGPPSAAPYPTADPPRPAPFQLRRSSEPALFAQGRDSPQQPWSASPPQDADRPRDP
RLVVQTPQHRPDWNLRAERIRLPQAEIRRDPRAERDPRGCNSPEQRHPTGYQNQRWAVRE
RDREQHRSPITAPYPGDGVNRPPRDPSQRDYDRYSATAFNRHTHTHPRKRDPDPRWIPTT
HSKRGRERTDH
NT seq
7416 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcatgtgccgttggtgcacgtcattgggtgacgatgttgcaaaactgctccag
aggtactgtgctgtgtcttggttagcagaggatgaggaggcagtcaacgagaaggcggca
ctcaacgatgacctcgataagtgcctggagtgtgtggtagcgtaccatcgggcgaaggag
gagttacctggactgcaccggaggctgtgggagttggagacgtccaggctcctggacttg
ttttcacatgcagcaaaagacgcacagccggctaaggacctcagctatgtagaagaggac
ggccgggaaatcggagtgtcagacatcagccccgcagtgtatgaggaccgtcttggggtt
cccctgtcagaggtcctcaaatatccctacctgctggcatcccctgaattgagtgaaatg
tgtgttgaggcaatttgtaagatggaggaatataactccttccgggtgtgttctaaagat
ccagggatctacctcctcctcgtccaccccaacgagacggttaggcggtgggcaattggt
gctgcaaggtctttaggtaaggtggaccgagacgacttttatgaccttcaggacatcttc
acctgcatgttctacattgtcgagctgagaatcccccagaacttcccagacatggatacg
tcctatgatccgacgactaagatgacattgctgcaaccgcatctttacgattccaaaaat
gcaaaaaactactggttgggtatctgtatgcttctgacacagctggatgcccaggctatg
gactccctgttcctggggccagacaaacaggccaacatactgctctgtatccttaatgcc
ttgaaggatgaagaaccatccaacgagatggatcccttctggccagtattgcaatgtttt
atggtgatcttggattgtttgggctccaggttttggggtcagattgagccatcccaagcc
ttccaggccatcacacaaagtcctagctactctggagagctcgaaagcatcagacaacaa
accatgatatcacgggttaaaacagaaactacatatgatgatgacatggtgacctgcagt
cagatggtatatgacagtaacaccaaagtgagcaagggaagcagacgttcacgtggtgtg
gatagcaatgtggtctatgaggatatgagttctctggtcaacctcctgcattcagacgtt
ggacaggcattgcgtgtgcacgacagcacatttctctggttcatcccctttgtaaaatct
gttatggaccttgacgaacacagcgtcctatacattactgaggttgtccactacctatgt
ggggagatcagcacagacctcccgaagccccaggttcgcatatgtgacaaggtcacagag
ttcttcactcttattctggtccatatcatcgaattgcacctggggagtggccgcatgaat
atgctctattactgcgctcccaagtgggtgggcgtgttagtgaaatgtgccaccctgcct
ggtgacgctttcgtccatacctcggaaggtccagtttctcactctgtgtcttccacatcc
tccttgagggtcagtgtgccccgaaaggcctctaccagcagggctgttccacaggcatgc
atgcatatcatccggtccctgctgaaggaagggaccaggttgaaccccaacagcaagtgc
caccacttcctgaaccttctgaacaagcacctcagagacgggcaacagagggagtggaag
ctgattaggccagagattcaggagcttcagatctgtttgaaggactatgtcaagatgatg
atgaacaggccaaccataagtactactccacctgaaccgctggacattgaggcagggcct
gtggcaccaaccacaccaccacttcagtcaagcaatgacccctcgggacctagcagctta
gctgaatttaaccctcctataaaacgggaagggttgtggtatgatgtcgaaggcagtaca
tctggtggtggggatttttctagagttcagagggggtgggacataaacatagcgttggtg
aaaaaggagcccctaacgcttgaagaggagtttgtagagccgactaaggattctagacca
aaccaagacaacttaacttccttgagggcagatccagagaaaatacaggtgatcaaatcc
agactcggccagcttatgaccaagaagtccaagtctgcgagagcgaggccctctgtaggg
ctcagtgaattcggtaaagagaaacctgaaaatctgctcaccagccgtagagaggaggca
tccaacctccaaggcattagcagacaccctccatgcctccaagaatccatggacaatgtg
cctctctctgttttaaaaagtaatcttaaagggaaagaaggctccaaatattcacgagat
cggagtaaaggaaactcgagacaatttgaccgaccacaatccccaccaaagtcaacttca
gatgtaattgttatatctgatgatgaggctacattagatgttggtagagcaagaaggcct
gagtgtttgtctgagacgtcccaaataaaaaatgaaccagatgcctctgaccagaatcct
agtccctggcgtgattatgatggagacatgagtgaatctcaggtgtttgaatttgaaaca
caggaagatatggtgtctgcctggtccaacagagattcagaaagtaacatgccacccgaa
aagcccaaagatgatagccctgtcagtccaacttcaagagagcctttatcaagctgggaa
tgtgatacacaaccgatctatgacgaggatatcgaaagagcctgtcagcaggttgagaag
gagcttgagaagcctaagaccccacctcaagggctcaaacgggccattgttgtcaaaaaa
agaaatcttcttgttgatgcaaaaccattggcctccaaatgtctgagcaagaaacctacc
gtggtagaaaaacgaatcaaagagcctgtgaaggatgctccccttgcagtcacaccgcca
ttgagaaaaagcagttcaacggtacgttcaaacagactggaaactgagacacactcttcc
ttaaccacatcagctatctcacacaaaacgtcattaactccagccattgtccctcctaaa
aaagtcagaaaagccacagagcctgtgtccacagctgagaagcttggccttaagaagaag
gtgcgaaaggcctttgatctttcccagggatcacgtgattctgttggtgatctgaggcac
cacggcgctacagtcaatgtcacacaggccaagaagtcgacccgacagaccaagaggtcg
aaggtgaccttaactcagaagacagtggtcaaagcgagtaacaataagctgttccagttc
ttaaggcagagcaagcaggcattgggagccggaatctctgaaaaggcagagccaatgaag
agaaatccgaaaaagattgatgaaattcaaactcccagttttgttacagaggaggacgat
gaagacgaggacctgcagtgttcccagcaagatcctgcccgtcatgaggaacagctgacg
ttcaatcgcagctctcaaggagccaatgaggaaaaaccagcatcctctaatacagtgagt
agtgtgttgtctaacatggacaggcagatctctccatactttcaaaggaatgatgtcaca
cctggaccttctggtcaagtccccaaaagcaatgaaggtgaagattatgatgcagactgg
atgaacctcacccaaatggagccaactgaaatggagatgtgcacgcagttggaggaggaa
gaagatttcttctacacacagcgggaccctgtagacatggacattgacgcagacagccag
aggccctttgaggataaaggagggtcttcagacttgacatggtttaaacaggcagacgaa
gggcaagaggctccacttgccacacagacttttaagaaaccggctactccgccaccctca
cgctctaacgtgactcatgatgagcgcttgttcctgaaaccaggaatgtctcctatgtca
gttaaaaaggccaagccgtccaccaccaagatctatgcaacctcaagctccaggagtgcc
tccttggtgcaagagatggagaggactgccaatgctccattttcagcttcctctgcacct
gctggaagaggtaggcctgcccggccagttgtgcctgcccggccagttgtgcctgcccgg
ccagttgtgcctgcccggccagttgtgcctgcccgaccagttgtgccaggcctgccagtc
gtgcatgcacaaagtccctgtgtacgacaacttcctcctcatccagaggttggtcagtct
cttccactgaatcgactcttatacaaacccatcgcaccacaaccaccacctaaacccatt
ccaccaaaacaaccaccacccagacctgaacaaaacctcccccgtccaccttgcctgccc
ctccgccctgtccagcacagcaacacatgttccaccccccagccctccacctccaggcat
gatgcccctttccaaagtccgatacccagcccagaggttggcttcagatttgacaccaac
ttcctagttcaacacatcctgaaatggacctttgatatgttcagtaactacaagcagttt
ggtataccctctgaggtatgtgagttcccactgaaggaagtaggaaccagcttcagctct
tatgatgaatactacaagaccttttaccccctgcttctcaccaacacgtttgaggagctt
gcaggtgaatggctaaagaacaaggaatcaggaaaggtggtaactcagaatttaaaagtt
gtcgcacatgagtacagccacagtgtttggaatgtcagttttacagcgagcattactgcc
agtgatgactcccgtcagatgttcccacgggaggaggacctggtcattctgtgcctgccc
cagaatagagatgcttactcttggcatgagccgggcttcttggaaccccaagaacaattt
ggatatgtgcagagatccaatgtctgcaacggagacgtgggccagtgcccaactctgaac
ctgatgataaagaccctggggaatgtgacgttagcgtacaagcaggcagtgcgctgtgat
gtggtgggctccctggtcagcaccttgagggagttcagggcaatctgtctgctcaatggc
agctctatgtgcaagcccctcctggccccacatgtctcctacttccaacctggcccggag
gtcatccccagcctcaacctgcctgattacaacctagaccaggtgagggcggtgagaacc
ggtttgtccgtcatcaagaaccagcaactcaccccaaaaatctgcctgatacacggaccc
ccaggaacgggaaagagcaaaaccatcgtgggcctgctgcaaaagctgttctctgaggga
gtacagagcatgactcctccagtgaacaggcattctgtaccccgccgcatgagggtcctt
ctgtgtgccccgtctaacgccgccatcgacaacctgatgaagaagattatcccggtcttc
aaggagaagtgcaggaacatccagggtaactgtgggaacatcaatctggtgaggcttggg
aacgaaaggacaatctccaagaatttaaaaccttttagcctggacagtcaggtgaaaaac
aaaacacaaagggcccagatgtcacaggactcagacattcaccggcgcagagcgcagctg
gacgagaacatagacaagatctccaagatgttgccaaaactgcaaaagaaagaggaaatg
taccatgagctggcagcacagaagtccagaatgctccgagagagagagccactcagcctc
caactcaaaaaatctcgcattaggaagctggaaacccaggcccaggtactgcaagatgcc
catgtggtctgctgcaccttgagcaccagcggcagcaccgtcctggagtcggcgttccgg
cgcctgggacacaagccctttagctgtgtcatcgtggacgaggcagggcaggccaccgag
acggagactctcatccctttgctctaccattgcaacgccctcatcctggtgggagacccc
catcaactgccccctacggttatctcccagaaagcgaaggagttgaattacggccagtcc
ctaatggctcggctggtgaagaacctggatcgctactgtaaggagaacaagacacccagc
cctgtggtcttccttagttaccagtaccgcatgcaccccgaaatctgcgagttcccctcc
aagcacatctactgcaaggcccttaaaactgacagtgagactgcagagaggagggggaac
tttggctggcctctcctgccctaccgtgtgtttgacgtgaccgacggtcaggaggtcaag
gagggagcgtcgttcagcaacctgaaagaggtgcagctggtagtgttcctgctgaggctg
atggctgagaagcagcaggtcaaggtgggggtcatcacgccgtacaatgcccagaaggac
cgcatcaaccgcgagatggccaaggtggacaacaagaacctcacggtggacgttgacact
gtggaaggcttccagggccgagagatggactgtgtcattgtctcctgcgtcagggcgagc
cacgagcagggcggcatcggattcctggggaatcgccagaggttgaatgtgaccatcacc
cgggccaagtttagcctgttcattctgggccatctacggacactccaggaaaaccaagac
tggggtgcgctcatcaaggatgccgcgacacgagacgtcattatatcaacgaatgagatg
aacttcaagacggacgccaggaagatcttcaaaaaggagctgaccaggagctcgtcttac
cccctcagagaaccaggccctccctctgctgccccctatcccaccgccgatccccccagg
cctgctcccttccagctacgccgctcttctgagccagccctgttcgcccagggcagggac
tcccctcagcagccctggtcggcatcccctccccaggacgctgacaggcccagagacccc
cgtctggtagtccagacaccccagcatagaccagactggaatctgcgagctgaaagaatc
aggctcccacaagccgagatcagaagagacccacgagctgagagggatccacgaggatgc
aacagcccagaacagcgtcacccaactgggtaccaaaaccagagatgggctgtcagggag
agggacagagagcaacaccgttcaccaattaccgcgccatacccaggagatggagtcaac
agaccaccgagggaccccagtcagagagactatgatcgctacagtgctacagccttcaac
cgccacacacacactcacccccggaaacgagacccagacccccgatggatccctaccacc
cactccaagagggggagagagaggactgaccactga
DBGET
integrated database retrieval system
