Oncorhynchus masou masou (cherry salmon): 135518376
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Entry
135518376 CDS
T10723
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135518376 (chd1)
03036 Chromosome and associated proteins [BR:
omm03036
]
135518376 (chd1)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
135518376 (chd1)
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
135518376 (chd1)
SLIK complex
135518376 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
135518376
NCBI-ProteinID:
XP_064799604
LinkDB
All DBs
Position
28:complement(79533795..79575730)
Genome browser
AA seq
1799 aa
AA seq
DB search
MAGRSEDEGVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSGSGSGSGSDSGSQSDSDS
GKSKEKNEPENKAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQSSSNSGSDSSSSE
DSDDDSSGKRRKSGSGSSSGSGSGSGSGSGSDSSAQEQEHSEESDDYEPSHKVKSRKLPT
KANARNGKKSNVQRKKPSAGSSSDDDYDGKKSSSNQGPRRQATQNVSYKEDEEQKTDSDD
LVEVCGEDVPPPDEDEFETLERVMETRIGRRGATGGTTTVYAVEADGDPNANFNPNKEAG
EQQYLFKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKESDKKKWIKCSSPEDVEYF
NCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYSECSWEDGALISRKYQ
KSIDDYMRRNQSKTIPSRDCKVLKQRPRFIPMKKQPSYIGGEGLQLRDYQLDSLNWMAHS
WCKGNSCILADEMGLGKTIQTISFLNYQFHEHQLYGPFLLVVPLSTLVSWQREIQLWAPL
MNVVVYLGDISSRGMIRTHEWMHVQNKRLKFNILLTTYEILLKDKGFLGNVPWAFIGVDE
AHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEIFEEEH
GKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYK
ALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDSEFYNKQEALQHLIRSSGKLVLLDK
LLLRLRERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEGS
EDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTK
SSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSATPFNKEELSAILKFGAEE
LFKEQEGEEQEPQDMDIDDILKRAETRENDPGPSTVGEELLSQFKVANFSMMEEEEIVMD
SERHHRGWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQVNFNGSESRRSRNRRY
SGSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDA
ELVDKSEHDLKRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKLV
ISHEEELAPLHKAIPADPDERKRYTIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSWE
MIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTANWRKR
KPRSKKTKAVKPAKVDEVVKSPSSTPHSDKSSEDEIEEEKEVVPVKLPPRRGRTERVVVK
EEPEPEEEPEPEEEKEPKEREMKKEVKKEKKEESREVKEKDLKEKKETKPVDPVHELEEV
TGEKPSEVKTEVREKVKKTSDTPVHITAGGENISEESEELDQKTFSVCKERMRPVKAALK
QLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEFD
ARKLHKLYKHAIKKRQENAQAADGITSTVNTHGFKHADMERLKDNCHHDDSSRDSYSSER
HHSSSRYHEDRDSRDRHTSDPYSRMSGSGGDSRKRPYSAFSNGKDHRDHYRSDRQDSRYY
SDNKHRKVDEHRSGRDGRMDSKERSHSDHRSHSEHHSGSDYSSGHHKSSSRGDSYRYHAD
WQMDQRASASGPRSPRDQRSPRDQRSPYDGRSPLGHRSPFEYSSDHKSTPEQIWSSRKT
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atggctggaagaagtgaagacgagggtgtgagcaacagcagtggagagtcaagcaactcg
gacgatgagtccgggtcgggttctggatcgggctccagctctagttccagttccagtagc
agctcgggaagcggctcagggagcggctcagactccggcagccagtccgattctgactct
gggaaatccaaggagaagaacgaaccagaaaacaaagccaagatcgacggagccgagttc
tggaagtccaaccccagtatcctagcagttcaaaggtcagctatgctcaggaaacagcaa
ctccagcagcaacaacaacagagctcttcaaacagtggatcggattcgtcgagcagtgag
gattcagatgacgactcgagtggaaagagaagaaaatcgggttcaggatcgtcctccggg
tctggatcaggttctggaagtggttccggttctgactcgtcagcacaggaacaggagcac
agtgaagagtctgatgattacgagcccagtcacaaagtcaaaagcaggaagcttccaacc
aaggccaacgccagaaacgggaagaagagcaatgtgcagaggaaaaagccctctgcgggc
tcatcctcggacgacgactacgacggcaagaagtcgtcgtcgaaccaggggcccaggcgc
caggccacgcagaacgtcagctacaaggaggacgaggagcagaagactgactctgacgac
ctggtggaggtgtgcggggaggatgtgcctccgccggatgaggatgagtttgagaccctg
gagcgcgtgatggagacgcggatagggaggagaggagcgactggaggcaccaccacagtg
tacgcagtggaggcggacggagaccccaacgccaacttcaaccccaacaaggaggcgggc
gaacagcagtacctgttcaagtggaaaggctggtcccatatccacaacacctgggagacg
gaggagacgctgaagctgcagaacgtcaagggcatgaagaaactggacaacttcaagaag
aaggaatcggacaagaagaaatggataaaatgttcttcaccagaggatgtggaatacttc
aactgtcaacaggaactcatggacgacttacactcacaatatcagctggtggagaggata
attgggcattcaaatcagaagtcggcggccggttttccggactacctgtgcaagtggcag
ggcctgtcgtactccgagtgcagctgggaggacggagccctcatctccagaaagtaccag
aagagcatagatgactatatgcgcagaaaccagtccaagaccattccctccagagactgc
aaggtgttgaaacagaggccgagatttattcccatgaagaaacagccgtcctatatcggt
ggagaaggactgcagctccgagactaccagttagacagcttgaactggatggctcactca
tggtgcaaggggaacagttgcatcctggcagatgagatgggcctgggaaaaaccatccag
accatctccttcctcaactaccagttccatgaacaccagctgtacggaccattcctgctg
gtggtgcccctgtccacactcgtctcctggcagagagagatccaactgtgggccccgctc
atgaacgtggtggtctacctgggtgacattagcagccggggcatgatcagaacacatgaa
tggatgcacgttcagaacaagagactcaagtttaacatcctgctaacaacatatgaaatt
ctcctaaaagataagggattcctggggaacgtgccatgggccttcatcggcgtggatgag
gcccaccggctgaagaacgacgactcgctcctttataagaccatgatggacttcaagtcc
aaccaccggctgcttatcaccggcacgccgctgcagaactcactcaaagagctctggtcc
ctgctgcacttcatcatgcccgaaaagttccactcgtgggagatatttgaggaggaacat
gggaagggaagggactctggttacaccagtctacacaaggagctggagcccttcctgctg
cgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtggagcagatcctcaga
gtggagatgagcgccattcagaaacagtactacaagtggattttgacgaggaactacaag
gccctgagtaaaggtaccaaaggtagcacgtctggcttcctgaacatcatgatggagctg
aagaagtgctgcaatcactgctatctcatcaagcccccggaggacagcgagttctacaac
aaacaggaggccttacagcacctaatccggagcagtgggaagctggtgctgctggacaag
ctgctgctgcgtctgcgggagcgtggccaccgtgtgctcatcttctcccagatggtccgg
atgctggacatcctggccgagtacctgaagagccgccagttcctcttccagagattggac
ggctccatcaagggagagatgaggaaacaggcgctggaccatttcaacgctgagggctct
gaggatttctgcttcttgttgtcaacgcgggcgggcggtctgggcatcaacctggcgtcg
gccgacacggtggtcatctttgactctgactggaacccacagaatgacctgcaggcccag
gccagagcccacaggattggccagaagagacaggtgaacatctaccgcctagtgactaag
agctcagtggaggaggagatcattgagcgggccaagaagaagatggtgctggaccatcta
gtcatccagaggatggacaccacgggcaagacagtcctccacaccggcaccgccccctca
agtgccactccgttcaacaaggaggagctgtcggccattttgaagtttggtgccgaggag
ctgttcaaggagcaggagggggaggagcaggagcctcaggatatggacatcgacgatatc
ctgaagagagccgagaccagagagaatgaccccggcccctccactgttggagaggagctg
ctctcacagtttaaggtggccaacttctccatgatggaggaggaggagatcgtcatggat
tctgagcgccaccatcggggctgggatgacatcatccccgaggagcagcggcggcggatg
gaggaggaggaaaggcagaaagagctggaggagatctacctgctgccccgcatgaggaac
tgtgccaaacaggtcaactttaacggcagtgagagccggcgtagtagaaacagacggtat
tccggctctgacagcgactccgtctcggatcgcaagaggcccaagaaacgaggacggcct
cggaccattccacgagagaacatcaagggcttcagcgatgctgagatacgaagatttatc
aagagctacaaaaagtttggtggaccacttgaaagactggatgctattgcccgtgatgcc
gaactagtggacaagtctgaacatgacctgaagcgtctggcggagacggttcacaacggc
tgtctgaagactctcagggagaacccctgtggaccagagaagacatcaggaggcagaaga
gggaaagtgaaaggccctacgttcaggatctcaggcgtccaggtgaacgccaagctggtg
atctcccacgaggaggagctggcgccgctccacaaagccattcctgccgaccccgatgag
aggaagaggtacacaattccatgccactccaaggcagcacactttgacattgattggggc
aaggaggacgactctagcctgctcataggaatctacgagtatggttacggcagctgggaa
atgattaaaatggaccctgacctcaacctgacacacaagctcctaccagacgaccctgac
aagaagccacaggccaagcaactgcagacgagagcagactatcttatcaaattactgagc
aaggacctggccaaaaaggaagcacagaggcaagcagggacggccaattggcggaagagg
aaaccgaggagtaagaagaccaaagctgtgaagccagccaaggtggacgaagtggtgaag
agtccgtcctctacgccccactcagacaagtcctcagaggacgagattgaggaggaaaag
gaggtggtcccggtaaagctgccacccagaaggggtcgaacggagcgcgtggtggtgaag
gaggagcctgagccagaggaggagcccgagccagaggaggagaaggagcccaaagaaagg
gaaatgaagaaagaggttaaaaaggagaagaaagaagagagccgcgaggtgaaagagaag
gacctgaaagagaagaaagaaaccaagcccgtggatccagtacatgaactggaagaggtc
acaggggagaagccgagcgaggtgaagactgaggtacgggagaaggtgaagaaaacttct
gacactccggtccatatcacagcagggggagagaacatctcggaggagtcggaggaactg
gaccagaagaccttcagtgtgtgtaaggagaggatgcgaccggtcaaggcggccctgaag
cagctggaccgtccggagaagggcctgtcggaacgcgagcagctggagcacacgcgccag
tgcctcatcaagatcggagaccacatcacagagtgtctgaaggagtactccaacccagag
cagatcaaacagtggagaaaaaacctgtggatatttgtttcgaaatttacagaatttgat
gcaagaaaattgcataaactgtataagcacgcaatcaagaaaagacaagagaacgctcag
gcagcagatgggatcactagcactgtaaatacccatggctttaaacatgcagacatggag
aggctgaaggacaactgtcaccacgacgacagcagcagggacagctacagctctgaaagg
caccactcgtcgtcgcgctaccatgaggaccgcgacagccgggacaggcacacctccgac
ccctacagcaggatgtcggggagcgggggggactccaggaagagaccctactcggccttc
agcaacggcaaagaccacagagaccactacaggtcagaccggcaggacagcagatactac
agcgacaataagcacaggaaggtggacgagcaccggtcaggccgagacggacggatggac
agcaaggagcgctctcactcagaccaccggtcccattccgaacaccactcgggctccgac
tactcatcgggccaccacaagtcgtcatcgcgaggtgactcctaccgctaccacgcagac
tggcagatggaccaacgggcatcggccagcggtccccgttcgccgcgtgaccaacgctcg
ccacgcgaccagcgctcgccctacgacggacgctcgccgttaggccaccggtcgcccttt
gagtactcgtcagaccacaagagcacgccagagcaaatctggagcagccgcaagacataa
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integrated database retrieval system
