Oncorhynchus masou masou (cherry salmon): 135519083
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Entry
135519083 CDS
T10723
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
omm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135519083
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135519083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135519083
NCBI-ProteinID:
XP_064800213
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All DBs
Position
29:complement(16582470..16721957)
Genome browser
AA seq
1681 aa
AA seq
DB search
MSGAMQATHQRQLKNLRFLILCFSVAILASGVDAGGKKHSGPCGGRDCSGGCQCFPEKGA
RGQPGLLGSQGPQGPPGRIGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGFSGLDGI
PGHPGQAGPRGKPGADGCNGTHGDSGSAGQPGYDGQPGYNGQMGRKGQKGDTLELSVFME
RFRGGSGHPGYPGLVGPQGYPGRSGYRGLPGPQGPQGYPGLPGPKGTMTKVLKGVKGEPG
DAGKPGPQGNSTHSQTGPITGPNGIKGEKGLKGDTGPEADNKGETGVIGMPGQRGIPGQD
GEQGLRGDVGEPGLRGRDGQKGSRGEPGELIYHDGPSGGQDRVGPPGPPGQLGPQGQRGL
EGEKGLPGRAGPPARKDHDQQQVVDLWGPFGEPGVKGEMGEPGELGIPALSPGPPGINGL
PGLGGPPGPPGSWADFYKGFSGPRGRPGSAGRKGLKGDHGLCECNIVHSPPGLPGPAGSQ
GDTGKSGEVGQQGESGEPGPRGVIGLPGFPGATGQPGPKGRKGDFIQAKEKGYAGDPGDP
GATGDPGMQGFPGPSGINGFPGNRGPSGDAPAGLTGEKGYQGRPGLPGLLGQMGEPGRVL
GATKGVRGLQGDDGERGHAGIEGRAGDPGVSGCSPRGDGEQNDITGDCYAIPGPPGIPGP
PGPHGLEGFLGLPGQKGSTGLLGDNGAKGEIGDQGRGGSPGYPGLRGLHGDLGQPGSKGN
SGTQGLPGQQGRNGEPGEKGPHGEIWGASTGQRGEVGLPGEQGPKGLSGEPGNEGYPGMG
GMPGMIGFKGDVGPSGLQGEQGGPGAAGKYGWPGVPGTAGVPGPTGSTGQPGLSGNRGDQ
GDPGTPGPIGLKGTLGEFGSQGAEGNTGDQGDPGVPGPTGHSGLPGFKGIKGSRGMSGFG
GMPGVSGLKGFSGQKGETGDPGGFGQKGNMGDYGSKGDRGLRGPTGEKPHIPRQIIKDMK
GTKGEDGTTGQIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFQGNPGAQGLPGPKGM
PGLTGSNGISGFPGMSGHRGDKGNPGAYGSSGDPGVKGVKGEGGAVIDMPGSTGLRGEDG
FPGVPGQKGYIGNLGDRGDGGFHGIEGMKGVPGEPGTGGPVGSDGQQGFPGNQGTKGWPG
VPGESGTHGQPGFPGQTGFPGLKGIFGLDGLKGQKGIPGLPGQDNIGTPGDPGAKGARGE
TGIPNSEVGTPGSLGLKGVQGQPGDQGQVGPPGFQGPQGPQGTSDRPGPSGEPGFPGPKG
LPGFPGPRGLPGEPSQYGEKGLTGQYGITGFPGLKGKQGDQGPSGYKGQSGVSGKKGVKG
GQGMMGFPGSSGFQGDRGPSGPKGSTGLTGYPGAPGNQGPAPLPTRMPGERGAPGPQGIR
GPEGVRGESGPKGPPGDPGYFGPQGQKGMPGVGGSPGTPGYRGNVGGRGHLGLQGMEGHH
GNPGTTGLHGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQD
LGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEEGDIKPYISRC
SVCEAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDF
RTTPFIECNGAKGTCHYFANKHSFWLTSIEQSFHAEPASETLKAGQLLSRISRCQVCMKN
L
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggcaatgcaggcaacacaccagagacaactgaagaacctgaggtttctgatt
ctatgtttttcggtggccatcctagcgtcgggagttgacgcaggtggaaagaagcacagt
gggccatgtggagggagagactgcagcggagggtgtcaatgcttccctgagaaaggtgcc
agaggccagcctggtcttcttggttctcagggcccccaggggcctccaggacgtataggg
gacccaggagtccagggagtccagggagagaagggcgacaggggcagaggaggcttcatc
ggccccaagggttctgtggggatgactggtgttcctgggttttccgggttggacggtatt
cctggccacccaggacaggctgggcctcgtgggaaacctggagcagacggatgcaacgga
acacatggagactcagggtcggcagggcaaccaggctacgatggccagcccgggtataat
ggtcagatgggcaggaagggacagaagggagacactctggagctgagtgtgttcatggag
cgcttcaggggaggttcagggcaccccggatatcctggattagttggtcctcagggttac
ccaggtcggtctggctacagaggactcccgggaccacagggcccacaagggtatcctggt
cttcctgggccaaagggcaccatgaccaaagtgttgaaaggggtcaaaggagaacctggt
gacgctggaaagcctggtccccaagggaactccacccattcccagaccggtccaattact
ggacccaatggcataaagggcgagaaagggttgaaaggtgatactggtcctgaggctgac
aacaaaggagagactggtgttatagggatgcctggacaacggggcatccctggtcaggat
ggagagcaaggactgaggggggacgtgggagaaccaggactgaggggcagagatggtcaa
aagggttccagaggagaaccaggggagctgatttatcatgatggtccctcaggagggcag
gacagagttggtccccctggtcctcctggacagctgggtccccagggccagaggggtctg
gagggggagaaaggtcttccaggccgcgctggacctcctgccaggaaggatcatgatcaa
caacaagtggtggatctgtggggtccattcggagagccgggggtaaagggagagatgggc
gaacctggagagctaggtatccctgccctcagccccggacccccgggtatcaatggcctg
cctgggctcgggggcccacccggaccaccaggatcatgggcggacttctacaagggattt
tcagggccgagggggcggccaggctctgcgggaagaaaaggactgaaaggtgatcacggg
ttgtgcgagtgcaacattgtccattcccctccgggcctgcccggccctgctggtagccaa
ggcgacactggaaagagtggcgaggttggtcagcagggagagtcaggagagccaggaccc
cgaggtgtcatcggactgcctgggttccctggtgccacaggacaaccgggtccaaagggc
aggaagggcgacttcattcaggccaaagagaaaggatatgccggggacccaggagaccca
ggtgcgacaggtgacccaggaatgcagggcttccctgggcccagtgggatcaatggattc
cctgggaatcgtggtccttcaggagatgcacctgctgggctcactggagaaaaaggttat
cagggccggccgggtctgcctgggttgttgggacagatgggagaaccaggacgggttcta
ggtgcaactaaaggggttcgagggttgcaaggcgatgatggggagcggggtcatgctggt
atcgaaggtcgagctggcgatccaggagtgtctggctgtagtccgagaggagatggagaa
cagaatgacatcacaggtgattgctatgccatacctggaccacccggtataccaggacca
ccaggaccccacgggttagaaggtttcctaggtctcccaggtcaaaaaggatcaacaggt
ctacttggagataacggggccaaaggagagataggagatcaaggcagaggagggtcacct
ggatatccaggtttaaggggcctccatggagacttgggtcagcccggctcaaagggtaat
tctggaacccaaggtctgccaggtcaacagggtcggaacggggagccaggagagaaggga
cctcacggggagatctggggagcgtcgaccggacaacgtggagaagtgggtcttcctgga
gagcagggacctaaagggctcagcggagagcctggaaacgagggttacccagggatgggt
ggcatgcctggtatgattgggttcaagggcgatgtaggtccttcaggtctgcaaggggag
caaggaggaccgggagctgctgggaagtatggctggccaggtgtacccggaacggctggt
gtccctggaccaacaggaagcaccggacaaccaggtttgagcggaaacaggggtgatcag
ggggaccctggcacaccagggcccataggactaaaggggacactaggggagtttggtagt
cagggcgctgagggaaacaccggagaccagggtgaccccggagtgccaggacctacagga
cactctggcctgccagggttcaagggtatcaaagggtctcgtggcatgtcagggtttgga
ggaatgcctggtgtgtcgggcctgaagggcttctctggacagaaaggagagactggcgat
cccggcggatttggccagaaaggaaacatgggcgactatggttcaaagggtgaccgtggt
ctgaggggtccaactggcgagaaaccccacatccctcgtcagatcatcaaagacatgaag
gggacaaagggagaagatggaaccacaggacagattggattcactggacccagaggtcct
aaaggttttcccggtgttccgggaatggagggctaccacggcgttcccggagaccccagc
gatgagaagggtttccaaggcaacccaggcgcgcagggacttccggggccaaaaggaatg
cctggtctgacaggatcaaacggaatcagcggctttcccgggatgtctggtcacaggggg
gataaaggtaaccccggtgcctacggatcctcaggagatccaggagtgaagggtgtcaaa
ggtgaggggggtgccgtaatcgacatgcctggatccacaggactgagaggggaggatggt
ttccctggggttccaggtcagaagggctacattgggaatctgggagacaggggagatgga
ggtttccatggtattgagggcatgaagggcgtgccaggtgaacctggcacaggaggacct
gtaggatctgatggtcaacaagggtttccaggcaaccagggtacgaagggatggcctggg
gtccccggagaatcaggcacacatggacaaccaggcttccccggacagacaggtttcccg
ggactaaagggtatattcggactggatgggctgaagggtcagaagggaatccctggactt
ccaggtcaggataacattggaaccccaggtgaccccggtgctaagggagcgaggggagag
acaggtatacccaactccgaggtcgggacacccggatcactgggtttgaagggagttcaa
ggacaaccaggtgaccagggccaggtgggacccccagggtttcagggcccccaagggcca
cagggcacctcagacagacccggaccgtcaggagaacctggcttccctggacccaaagga
ctgccaggtttccctgggccccgtggtttacctggtgagccctctcaatatggagagaag
ggtttaactggccagtatggcatcactggattccctggtctgaaaggaaagcagggggat
cagggaccatcaggatacaaaggacagagcggagtgtctgggaagaaaggtgtgaaggga
ggtcaagggatgatgggatttcctggtagttctggtttccaaggagaccgaggtccttcc
ggcccaaaaggaagtactggactcacaggttatccaggagccccaggtaaccagggccca
gccccactacccaccaggatgccaggagagaggggtgctccaggtcctcagggtatccga
ggaccggagggggtacgaggggagagcggccctaaaggaccccctggagatccaggctac
tttgggccccaggggcagaaggggatgccaggggtgggtggcagcccagggacccctggg
taccgtgggaatgttggagggaggggccatcttggtctgcagggcatggaaggtcaccat
ggtaacccaggaactacagggttgcatggcatgccgggccgcagtgtgagtgtgggatac
ctgctggtgaagcacagccaatcagagcagacccccatgtgccctgtgggcatgtcgaag
ctgtgggacggctacagtctgctgtacttcgagggccaggaaaaggcccacaaccaggac
ctaggtctggcgggctcctgcctccctcgtttcaacaccatgcccttcctgtactgcaac
cccggagacgtctgctactacgccagccgcaacgacaaatcctattggctgtccaccact
gcgccccttcccatgatgcccgtggaggaaggtgatatcaaaccctacatcagccgctgc
tctgtgtgcgaagctccgtccgtcgccatcgccgtgcacagccaggatattaccatccca
caatgccctgctggctggcgcagcttgtggattggctactccttcctcatgcacacggca
gcaggtgacgagggtgggggtcagtctctgtcgtctcctggttcctgtctggaggacttc
cgtaccacgcccttcatcgagtgtaacggggccaagggcacctgccactacttcgccaac
aaacacagcttctggctcacctccatcgaacagtccttccatgcagaacctgcctcagag
accctgaaagcaggccagctcctctcacgcatcagccgttgtcaggtctgcatgaagaac
ctgtga
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