KEGG   Oncorhynchus masou masou (cherry salmon): 135519342
Entry
135519342         CDS       T10723                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    135519342
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omm03041]
    135519342
   03036 Chromosome and associated proteins [BR:omm03036]
    135519342
Spliceosome [BR:omm03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    135519342
 Complex B
    135519342
 Complex C
   U2 SnRNP specific factors
    135519342
Chromosome and associated proteins [BR:omm03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    135519342
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 135519342
NCBI-ProteinID: XP_064800590
LinkDB
Position
29:complement(31533572..31549094)
AA seq 1326 aa
MAKVAKTHEDIEAQILEIQGMKAALVEEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAKRKRRWDQTAEKQDQSGTPSNTGTPKKMSSWDQADQAAEQT
PGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGHTT
PGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRW
DETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERNRP
LTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQIND
QPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQ
ITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVI
EPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASA
LGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQ
QKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMD
AEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHF
WQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGN
LGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLW
RLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALK
AIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRI
CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI
VAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM
DRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLR
VAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYLRY
ELEYFL
NT seq 3981 nt   +upstreamnt  +downstreamnt
atggcgaaagtcgccaaaacacacgaagacattgaggcccagatcctggagatccagggt
atgaaggctgccctggtggaggagggagcagatcagggtgtgggcctggactcgactgga
tattatgaccaggagatctatggtggcagtgacagccgcttcgctggatatgtcacctcc
attgctgccaatgaacaggaggatgatgacgaggaggactcttcaacaagtctacttgga
cagaagaaaccggggtatcatgctccggtggctatactcaatgcgataccacagtcagat
gaacagtacgacccgttcgccgagcacaggcccgccaagattgcagagcgtgaggacgag
tacaaggccagacgacgacagatgatcatctctccggagcgactcgacccctttgcagac
gggggcaaaacgccggacccaaagctgcagtccaggtcgtacatggatgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagaaaaggcgaagacg
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgccgctgccgccgccaag
cgcaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaacccccagcaac
accggcacacccaagaagatgtctagctgggaccaggctgaccaggctgctgagcagacc
ccaggacacacccctggccacaccccatccaacagccgctgggacgagacccctggcagg
aataagggcagcgagaccccaggggccactcccagctcccggatgtgggacccaaccccc
agccacaccccggccggagcagccaccccaggcagaggggacacaccgggacacaccacc
cccggacatgggggagccacaggcagcgtgcgcaaaaaccgttgggatgagacccccaag
actgagagggagacccctggtcatggtagtggttgggccgagactccccgtacagacaga
ggagacgagtctgtgggagagacccccacccccggggccagtaagaggaagtcccgttgg
gacgagacccctgccagccagatgggctcttccactccactgatgacccctgggaagacc
cccattggaacccctgccatgaatatggccactccctctccaggtcacctgatgagcatg
acaccagagcagctgcaggcgtggcgttgggagagggagatcgatgagagaaaccgacct
ctcacagacgatgagctggacgccatgttcccagagggatacaaggtccttcccccacca
gcaggctatgtgcccatccgtaccccggcccgcaagctgtctgccacacccacccccatg
gggggcatgacgggcttccacatgcagcaggaggaccgctccatgaagcagatcaacgac
cagcccagtgggaacctgcccttcctcaaaccagacgacatccagtactttgataaactg
ctggttgaggtagatgagtccactctgagccccgaggaacagaaggagcgtaagatcatg
aaactgctgctgaagatcaagaacggaacacctcccatgagaaaggctgccctgcgtcag
atcacagacaaggcgagggagtttggagcagggcccctgttcaaccagatcctgcccctg
cttatgtctcctactctggaggaccaggagcgccacctactggtcaaggtcatcgaccgc
atcctctacaagctggacgatctcgtccgcccatacgtacacaagatcctggtggtgatt
gagcccctgctgatcgatgaagattactacgccagagtggagggcagagagatcatctct
aacttggccaaggctgccggcctggccactatgatctccaccatgaggcctgatattgac
aacatggatgagtatgtcagaaatacaacagccagagctttcgctgtcgtagcgtccgct
ctgggtatcccatcccttctgcccttcctcaaggctgtgtgtaagagcaagaagtcatgg
caggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatgggttgtgcc
atcctgccccatctgaggagtttggtggagatcatcgagcatggtctggtggatgagcag
cagaaggtgcggaccatcagtgccttggccattgctgccctggcggaggctgccactccc
tacggtatcgagtcctttgactccgtactcaaacccctgtggaagggtatcagacagcac
agaggaaagggtttggctgcgttcctgaaggccattggctacctgatccctctaatggat
gctgagtatgctaactactacaccagagaggtcatgctgatcctcatcagagagttccag
tcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgctgtggtact
gacggtgtggaggccaactacatcaagacagagatcctgccccccttcttcaagcacttc
tggcagcacaggatggccctggacagacgcaactacagacagctggtggacaccacagta
gagctggccaacaaggtgggagcagcagagatcatctctcgtatagtagatgacctgaag
gacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatggggaac
ctgggagctgctgacatcgaccacaagctggaggagcagctgatcgatggcatcctgtac
gccttccaggaacagaccactgaggactctgtaatgctgaacgggtttggtacggtggtg
aatgccctggggaagagggtgaagccctacctgcctcagatctgtggtacggtactgtgg
cgtctcaacaacaagtctgccaaggtccgccagcaggctgctgacctcatctctcgtacc
gccgtggtcatgaagacctgccaggaggagaagctgatgggtcacctgggagtggtgtta
tatgagtacctaggagaggagtatcctgaagtactgggaagcatcctcggtgctctcaag
gccatcgtcaacgtcatcggcatgcataagatgactccaccaatcaaagacctgttgccg
cgcctgacgccaatcttgaagaacagacatgagaaggtgcaggagaactgtattgacctg
gtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggaatggatgcggatc
tgttttgagctgctggagctcctgaaggcccacaagaaggccatccgcagagccactgtc
aacacctttggatacatcgccaaggctatcggaccccatgatgtgctggccacactacta
aacaacctgaaggttcaggagcgtcagaacagagtgtgtactaccgtagccatcgccatt
gtggctgagacctgttctcccttcaccgtgctccccgcgctcatgaatgagtaccgcgtg
ccagagctcaacgtgcagaatggcgtgctcaagtccctctccttcctgtttgagtacatt
ggggagatgggcaaggactacatttacgctgtcacgcccctgctggaggatgcactgatg
gacagagacttggtccacagacagacagccagtgccgtggtgcagcacatgtccctgggc
gtctatggcttcggctgtgaagactctctcaaccacctgctcaactatgtgtggcccaac
gtgtttgagacgtcgccccacgtcatccaggctgtgatgggggccttggaaggcctcagg
gtggccattggcccctgccgcatgctgcagtattgcctacagggtctgttccacccagcc
aggaaggtgcgagacgtctactggaagatctacaactctatctacatcggctcccaggat
gctctcattgctcattacccacacgtctacaacgatgagaagaacccttacctccgctat
gagctggagtacttcttgtga

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