Oncorhynchus masou masou (cherry salmon): 135519657
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Entry
135519657 CDS
T10723
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135519657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135519657
Spliceosome [BR:
omm03041
]
Complex A
U1 snRNP components
U1 related factors
135519657
Complex B
135519657
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
Motif
Other DBs
NCBI-GeneID:
135519657
NCBI-ProteinID:
XP_064800971
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Position
29:40600911..40628863
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AA seq
782 aa
AA seq
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MPGTVGTTNGSPQDDQPKNKSVWTEHKSLDEKTYYYNTETKQSSWEKPDDLKSPAEQMLS
KCQWKEYKSDNGKAYYYNSHTKESRWTKPKELEDLEAMIKAEENGMAEVGAPGTVIITPN
LQLDSAASMATMMMEMPAMRPAPTVSVEQMSMVPMLVAEVNADSPVNSTEDLAGMEASVS
NDASKEERPELVKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALP
KLSEKKQAFNAYKVQTEKEEKEETRIKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAE
LDVWSTVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSE
AQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRE
SFQKFLDELHDNGQLHSMAAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYV
EDLKARYHDEKRIIKDILKDKNFLVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLL
EKAEAREREREKEEARKMKRKEATFKSMLKQATPALEPETTWEEVRERFLKESAFEDVTL
ESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEGEDDYHTKKK
KRSQSKSPSERSSSGESDRSYKKSKKHKKKGKKRRHKSQSPESEGERKEKGGRERDSKRE
KDQEKEKENDKSRGKSRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLD
AP
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgcctggaacagttggtaccacaaatggctcgccacaggatgaccaaccaaagaataag
tctgtgtggacagaacataagtccctggatgagaagacctactactacaacacagagacc
aagcagtcttcctgggaaaagccagacgacctgaaatctcctgcagaacaaatgctgtct
aaatgccaatggaaggagtacaaatcagacaatgggaaggcgtactactacaactcccac
actaaggagtcccggtggaccaaacccaaagagcttgaagatctggaagccatgataaaa
gctgaggagaatgggatggcggaggtaggtgctcctggcactgtcatcatcacccccaac
cttcagctcgacagcgctgcttcgatggcgaccatgatgatggaaatgccagccatgagg
ccagctccaaccgtctcagtggaacagatgtccatggtgcccatgcttgtagctgaggtc
aacgctgactcgcctgtcaactccacagaggacttggccggcatggaggcctcagtcagt
aatgatgcctcaaaagaggagaggccagagctggtgaagaaaacgtacaagtggaacacg
aaagaagaggccaagcaggccttcaaagagctcctgaaggagaagggcgtttcatccaat
gcgtcttgggaacaagccatgaaaatgatcatcaatgacccacgctacagtgctctgccg
aagttaagtgagaaaaagcaggccttcaatgcttacaaggtgcagacagagaaagaggag
aaggaggagactaggatcaagtacaaggaatccaaggaaacgtatcagcgatttttggaa
aaccacgagaaaatgacatctacaaccagatataagaaagcagagcagatgtttgcggag
ctcgatgtgtggagcaccgtcccagagagggacagactggagatctatgaagacgtcctg
ttctacctagccaagaaggagaaggagcaagccaagcagctgaggaagaggaactgggag
gctctgaagaacatcctggacaacatggccaacgtgacgtaccgcaccacctggtccgag
gcccagcagtacctgctggacaaccccaccttcgcagaggacgaggagctccagaacatg
gacaaagaggacgcgctgatctgtttcgaggagcacatccgagctctggagaaggaggag
gaggacgagaagcagaagacactgctgagggagaggaggagacagcgcaagaacagagag
tccttccagaaattcctggacgagctccatgacaacggtcagctccactccatggctgcg
tggatggagatgtaccccaccgtcagctctgacatccgcttcgccaacatgctgggccag
ccagtttatggtgtctattccgcaggctccactcccctcgatctgttcaagttctacgtg
gaagacctgaaggctcgctaccacgacgagaagcggatcattaaggatatcctgaaggac
aaaaacttcttggtcgaggtaaacactagctttgaagactttggcactgtgatcagctca
gacaagagagccacaacgctggatgcaggcaacatcaagctagccttcaacagcttgctg
gagaaggcggaggctcgggagagggagcgggagaaggaggaggccaggaagatgaagagg
aaagaggctaccttcaagagcatgttgaagcaggctaccccagccctggaaccagagacc
acctgggaagaagtccgagaaagattcctcaaagaatctgcattcgaagacgtgactctg
gaatctgagaggaaaaggatattcaaagacttcatgcatgtcttggagcacgagtgccag
catcatcactccaagaccaagaaacactcaaagaagtccaagaagcaccacaggaagcgc
tcccgctctcgatcgggctcagagtctgaaggtgaagacgattatcacaccaagaagaag
aagcgctcacagtccaagtccccgtccgagcgctcctccagtggggaatctgatagaagt
tataagaagtccaagaagcacaagaagaaggggaagaagaggcgtcacaagtcgcaatct
cctgaatccgaaggcgagcggaaagagaagggaggaagagagagggacagcaagcgggag
aaggaccaggagaaagagaaagagaacgataagtcccgggggaagagtcgctctgaatcc
aagcagaagtcacctaaaaggaaatctaccaaggaggagggtggctgggacacttcaggc
agcgagctgagtgaaggggagctggagaagaggaggaggactctactggaacagctggat
gctccttga
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