KEGG   Oncorhynchus masou masou (cherry salmon): 135520141
Entry
135520141         CDS       T10723                                 
Name
(RefSeq) DNA repair protein XRCC1-like
  KO
K10803  DNA-repair protein XRCC1
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Pathway
omm03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:omm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    135520141
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:omm03400]
    135520141
DNA repair and recombination proteins [BR:omm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     135520141
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT F5_F8_type_C SLC12
Other DBs
NCBI-GeneID: 135520141
NCBI-ProteinID: XP_064801558
LinkDB
Position
29:60417360..60438840
AA seq 631 aa
MPEIKLMHIVSCSTEDNTHKADNLLSSDTHRKWKAAKPGEKQTSVIIQFEKEEQVYSIDI
GNEGSAFIEVLVGHSTSVKDQDYEVLLVTSSFMSPTESRNGTNTNRVRFFGPTQLVKAQA
QEKWDRVKIVCSQPYNKSIAYGVAFVKFHSPSEESDLPTTTTPKLTKLGQFRVKDEAPSP
CPSLQPGSLFFNRESTSKASPALKVSPQTEKLSYAAAALQSGSGSGHSSAPPSSSSPPPQ
APVKRKFEFSKERRSALAPPPSKKPSPIGSPELGTTTPKPKVKTSTASTPSPSTDKASPA
QNTPDIKKKESLPKPEAKSRPKPSKAQSSSSEAPVPLNKIMEGVVFVLSGFQNPFRGDLR
DKALAMGAKYHSDWTPDATHLICAFSNTPKYSQVKSAGGVIVRKEWVLDCHKRKQKISFK
QYLMDGAESSSEGSDDEESEEEKERRTPQKRREEERQPTPRKTPIKKEEDLYGGSTDADE
PEDESGMDTEDELKRVESESRQKKGEKERKGVEEEDPFGGSTDENTDAEAEEDEPIPELP
DFLTGKRFFLYGKFPNNDRRLLLRYIIAFNGAVEDYMSEKVQFVVTSEGWHDSFEDALME
NGNLSFVKPTWIFAINDRQKTLPYQPYTVVP
NT seq 1896 nt   +upstreamnt  +downstreamnt
atgccggagataaaactcatgcacatcgtgtcttgcagcactgaagacaatactcacaag
gctgacaacctgctgagctcagacacacatagaaaatggaaagcagcaaagccaggggag
aaacaaacatcagtcattatacagtttgagaaagaagagcaggtgtacagcatagacata
ggaaatgaagggtctgcttttattgaggtgctggtgggacactcaacctctgtcaaagac
caggactatgaggttctgctggtcacgtcgtccttcatgtcccccacggagagccgtaac
ggcaccaacaccaaccgtgtgcgcttctttggccctacccagctggtgaaggctcaggcc
caggagaagtgggaccgcgtgaagattgtgtgtagccagccgtacaacaagagcatagca
tacggagtggccttcgtgaagttccattcgccatcagaagaaagtgatctaccaaccaca
acaacaccgaagttgaccaagcttggccagtttcgggtgaaggatgaggccccctcgcct
tgccctagtcttcagccaggcagcctcttcttcaacagagagagcacctccaaagccagc
ccagcgctcaaggtttcgccacagactgagaagctcagctatgcagctgccgccctgcag
tctgggtctgggtctggccactcctcagccccaccgtcctccagttctcccccaccacag
gcaccagtgaagagaaagtttgagttcagtaaagagcgccggtctgccctcgctccgccc
ccctcaaagaaacccagccctatcggctcccctgaactgggcactaccaccccgaaaccc
aaggtgaaaaccagcacagccagtactcccagccccagcactgacaaagcctcccctgcc
cagaataccccagacatcaagaagaaggagagcctgcccaaaccagaagccaagtccaga
cccaaaccctccaaagcccagtccagctcctctgaggcccctgttcccctcaacaagatc
atggagggggtggtgtttgtgctgagcggcttccagaaccccttccggggggacctgagg
gacaaagccctggccatgggggccaagtaccactctgactggacccctgatgctacacac
ctcatctgtgccttctccaacacccccaagtacagccaggtgaagtcagcagggggcgtc
atcgtccggaaggagtgggtgctggactgtcacaagaggaagcagaagatctccttcaaa
cagtacctgatggacggagcggagtccagctcggaggggagcgacgatgaggagagtgag
gaggaaaaagagaggaggactccacaaaagaggagagaagaagaacggcaacccactccc
agaaagacccccatcaagaaagaggaggatctgtatggtggttccacagacgcagatgaa
ccagaagatgagtctggcatggacacggaggatgagctgaagagggtggagagtgagagt
cggcagaagaaaggagagaaggagagaaaaggggtggaggaggaggacccttttggaggg
tcgactgacgagaacactgacgctgaggccgaggaggacgagcccatccctgagctacca
gatttcctaactggaaagcgatttttcctttacggcaagttccccaacaatgacagacgc
ctactcctgcgttacatcatcgccttcaacggggcggtggaggactacatgagtgagaag
gtccagtttgttgtcaccagcgagggatggcacgactcctttgaagacgcactgatggag
aatggtaatttaagctttgtcaaacccacatggatttttgccatcaacgatcgacagaag
acgctgccatatcagccctacactgttgtcccttga

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