Oncorhynchus masou masou (cherry salmon): 135520168
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Entry
135520168 CDS
T10723
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135520168 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135520168 (dhx16)
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135520168 (dhx16)
Spliceosome [BR:
omm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135520168 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
135520168 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
nSTAND3
SRP54
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
135520168
NCBI-ProteinID:
XP_064801597
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All DBs
Position
29:61005722..61023112
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AA seq
1053 aa
AA seq
DB search
MANLEQWVSDSLHDILGLSDRYVAQFMIGSARKSSSSQDFVAHLKSTGTIDINQRVIAFA
QELYEKIPRKQVVEKPARAIERHVMEIERKNRTYTLLSDSESDGEAVREREKEKKKSKDR
GDKRKHLRKRKESQSSSEEETPKSSKLGHGDQKSSKKDEEEEEEWEKEERERVLDLEERD
AFAERMKLKDKDKTRNIMERTDKKGYEEAQKRLKMAEEDHKKILPELRKESRRNYLSKRE
AEKLEDLEAEIADEEYLFSTDALTERERKELEYKRNLRDLAKDYKKAGAKEKEERKNRYY
MPEEKRSKDIPQRDMELELEMPMEGGGEQGRWEEERLKTASLIFGAKKEREKGLKAEREK
YQLILEEDEMINFVSSAVIMKGTQDEKEQEQAALSQAEVQKQSIQEVRRSLPVFPYREDL
LLAIQQHQILVIEGETGSGKTTQIPQFLMESGYNDGGMKIGCTQPRRVAAMSVAARVAQE
VGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLH
TDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLEACVVSVLQIHVTQPPGDCLVFLTGQEEIETCCELLQERCRRLGSKISELLVLPIY
ANLPSDMQAKIFSPTPPGSRKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLNVYTQW
LESGYSTQWCYENFIQFRSMKRARDVREQLEGLMDRIEVEVCSSGGDIVPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSWL
LEVAPHYYKNKELEDSSSKKMPRKQGKAKEELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctagaacaatgggtgagtgacagtctgcatgacatccttggccttagtgac
agatatgtcgcccagttcatgatcggctctgcgcgtaaatcatcgagctctcaagacttt
gtcgcccacctaaagtcgacgggcaccatcgacattaatcagagagtgatcgcctttgca
caggaactgtatgaaaagattcctcgtaagcaagtggttgaaaagccagccagagcgata
gagcgacacgtcatggagattgagaggaagaatcggacttacaccctactgtcagacagc
gagagtgacggagaggcagtgagagagagggagaaggagaagaagaaaagtaaagaccga
ggcgataagaggaagcacctcaggaaaaggaaggagagtcaatcatctagtgaagaggag
acccctaaaagtagtaagctgggccatggcgaccagaagtccagtaagaaggatgaagag
gaggaggaggagtgggagaaggaagagagagaacgcgtactggatctggaagagagggat
gcctttgccgaacgaatgaaactgaaggacaaagacaaaacgaggaacatcatggagaga
acggacaagaagggctatgaggaggctcagaaaagactaaagatggcagaggaggatcac
aagaaaatccttccagagctgcggaaggagtctcgcaggaactacctgtcaaagagagag
gctgagaagctggaggacctggaggcggagatcgccgacgaggagtacctgttctcaaca
gacgcgctgactgagagggagcggaaggagctggagtacaagcgcaacctccgagacctg
gccaaggactacaagaaagccggtgccaaggagaaagaggagaggaagaacagatactac
atgccagaggagaagaggagtaaagatattcctcagagggacatggagctggagttggag
atgcccatggagggtggaggagagcagggccgctgggaggaggagaggttgaagaccgcc
tcgcttatcttcggggccaagaaggagagggagaaagggttgaaggcagaaagagagaag
taccagctgatcctggaggaggacgagatgatcaactttgtcagcagtgccgtcatcatg
aagggaacccaggacgagaaggagcaggagcaggcagccctgtcccaggcggaggtccag
aagcagtccatccaggaggtgagacgcagcctgcccgtgttcccctacagagaggacctg
ctcctggccatccagcagcaccagatcctggtcatcgagggagagacgggctccggcaag
accacccagatcccccagttcctcatggagtcgggctacaatgatggaggcatgaagatt
gggtgtacccagccccgtagagtggcagccatgtccgtagcagccagggtggcacaagaa
gtgggcgtcaagctgggcaatgaggtaggctacagtatccgttttgaggactgtacgtca
gagaggacagtactcaaatacatgactgacggaatgttgctcagagagttcctgacagag
cctgatctggccagctacagtgtggtcatcattgatgaggcccacgagcggacgctgcac
acagacatcctgtttggtctgatcaaggacattgcccggttccgtccggacctgaaggtg
ctggtggccagcgccaccttggacacagagcgcttctcctgcttctttgacgacgcgccg
gtattcagaatccccggcaggaggttccctgtggacatcttctacactaaggctcctgag
gcagactacctggaggcctgtgttgtgtcggtgctacagatccacgtcacacagcccccc
ggagactgtctggtcttcctcactggacaggaggagattgagacttgctgtgagctgctg
caggagagatgcaggcgtctgggttctaagatatcggagctcctggtgcttcccatctac
gccaacctaccttcagacatgcaggccaagatcttcagccccacaccccctggctcacgc
aaggtggtggtggccactaacattgcagagacctctctaaccatcgatgggatcatatac
gtcatagatccaggcttctgcaagcagaagagctataacgcccgcactgggatggagtct
ctgattgtcacgccttgctcacgggcctcagccaatcagcgagcaggtcgtgcaggcaga
gtggcggctgggaagtgtttccgtctctacactgcgtgggcgtttaaacacgagatggag
gagtccaccgtgcccgagatccagcgaactaacctgggcaacgtggtgctgctgctcaag
agcttgggaattaatgacctcatccactttgatttcatggacccaccccctcatgagacc
ctggtgctagctctggagcagctgtacgcactgggtgcactcaaccacctcggagagctc
accaagttgggccgcaggatggctgagctgccggtggaccctatgctgagcaagatgatc
ctggcctcagaacagtataagtgttctgaggaggtgttgaccatcgcggccatgctgtct
gtgaacaactccatcttctaccgacccaaagacaaggtggttcacgccgacaacgccagg
cagaactttgtggtccccgggggagaccatatggtgctgctcaacgtctacacacagtgg
ctggagagtggctactccacccagtggtgctatgagaacttcatccagttccgctccatg
aagcgggcgcgggatgtcagggagcagctggagggcctgatggacaggatcgaggtggag
gtgtgcagctcaggcggagacatagtgcccatccgcaaggcagtgacggcggggtatttc
taccacacggcgcggcttagcaaggggggctacaagacggtgaagcaccagcagacagtc
tacgtccaccccaacagctccctgttcgaggagcagccccgttggctcatctaccacgag
ctggtcttcaccaccaaggagttcatgagacaggtgattgagatagacagcagctggctg
ctggaggtggctccccactactacaagaacaaggagctggaggacagcagcagtaagaag
atgcctcgcaaacagggcaaggccaaggaagagctgggctaa
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integrated database retrieval system
