Oncorhynchus masou masou (cherry salmon): 135520747
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Entry
135520747 CDS
T10723
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135520747
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
omm03310
]
135520747
Transcription factors [BR:
omm03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
135520747
Nuclear receptors [BR:
omm03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
135520747
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
TPR_IFT122
Motif
Other DBs
NCBI-GeneID:
135520747
NCBI-ProteinID:
XP_064802589
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Position
29:complement(82088474..82115597)
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AA seq
509 aa
AA seq
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MEFEEHDSPEHINTEEPIKRGDTVSKKTHLRDTVSKKTHLTQIEVIPCKICGDKSSGVHY
GVITCEGCKGFFRRSQLPSVSYSCSRQSNCPIDRASRNRCQSCRLQKCVTQGMSRDAVKF
GRMSKRQRESLRAEVERHRQQQQLHLQAEAQPALPDPSKACRFRTPHLLQAPAPAYSFPG
EPELPPCPTDVPPYLVCSPGESQAPGLAYQGCCVSPGSGHSDERGFDSRQASPDQTIGMG
IRSYDPEDPYCPYPPSTSLLHIEGLCDSIVQSHRDTSQFRLEELQALRWKLFSREEIHAY
QSKSVDEMWQHCAVRLTEAVQFVVEFAKRIPGFRGLGQNDQITLLKTGSMEVVLVRMSRC
FNTENSTVFFDGKFGSTELFKSLGCGDLMVAVFDFTHRMCALRLTEQQMALFSSLVLINP
DRPCLEDRGRVHRMRRDLEACLSHMLCRDNQESLQHKLYQKVSVLRSLCSLHVEKLHWFS
QRYPLTVHSVFPPLYKELFTSDLPSVDSR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggaatttgaggagcacgattcacccgaacacatcaatacagaagaaccaatcaaaaga
ggagacactgtgtccaagaagactcatttaagagacactgtgtccaagaagactcatttg
actcagattgaggtgattccctgtaagatctgtggtgataaatcatcaggagttcactat
ggagtcatcacctgcgagggctgcaagggttttttccggcgtagccagctgccgtccgtg
tcctactcctgttccagacagagtaactgtcctatagacagagccagccgcaaccgctgc
cagagctgccgactgcagaagtgtgtgacccagggcatgagccgggatgcggtgaagttt
ggtcggatgtcgaaacgtcagcgggagtctctgcgtgccgaggtggagagacaccgtcag
cagcagcagctgcatctccaggcagaggcccagcccgccctgcccgaccccagcaaggca
tgccgtttccggacaccccacctgctccaggccccggctccggcctactccttccctgga
gagccagagctgccaccctgcccgaccgatgtgcccccctacctggtgtgctccccaggc
gagtcccaggctccaggtctggcctaccagggctgctgtgtgtctcctggtagtgggcac
tcagacgaaagagggttcgactcccgtcaggcatctcctgaccagacgatagggatggga
attagatcgtatgacccagaagacccctactgcccttaccccccctccacctccctgcta
cacatagaggggctgtgtgacagtatcgtgcagtcccatagggacaccagtcagttcaga
ctagaggaactacaggctctgagatggaagttgttcagcagagaggagatccatgcctac
cagagcaagtcagtagatgagatgtggcagcactgtgccgtgaggctgactgaagcggta
cagttcgtggtggagtttgccaaacgcatcccagggttccgtgggcttggacagaacgac
cagatcaccctgctcaagactggatcgatggaggtggttctggttagaatgagcaggtgt
tttaacacagagaacagcaccgtcttcttcgatgggaagtttggcagcactgaacttttc
aagtctctgggctgtggtgatctgatggtggcggtgtttgacttcactcacagaatgtgt
gccctgagactgactgagcagcagatggctctcttcagctcactggtgctcattaaccca
gatcgcccctgtcttgaggatagaggcagagtacatagaatgagaagagacttggaggca
tgcctcagccacatgctatgcagagacaaccaggagagccttcagcacaagctctaccag
aaggtgtcagtgttgcggtctctgtgcagtcttcatgtggagaagctgcactggttcagc
cagcgctacccgctcaccgtccactctgtcttccctcctctatacaaggagctgttcacc
tctgacctgccttctgtggactcccggtga
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