Oncorhynchus masou masou (cherry salmon): 135520760
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Entry
135520760 CDS
T10723
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135520760
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Gene cluster
GFIT
Motif
Pfam:
Collagen
FlgT_N
Motif
Other DBs
NCBI-GeneID:
135520760
NCBI-ProteinID:
XP_064802611
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Position
4:complement(14065886..14092692)
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AA seq
1363 aa
AA seq
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MLFSTGADVNNNVIKNIIRKLKYDFSYDTKKEKSSIVVFFFLEYTRRGYAAASAVASKPT
RGRSHSRESEIRCRLQSASPTAKRWTELEDVKRLLKGGCSSSISPPRSPTSTLPIPRKAR
VETRTMPNSSQSGQYDSTTLDLRMPSYMWSGPTAGGYGYHSNAINLSPTSTLQHSPITLT
ATGLQNNLALSSTSMNSGLSASSTVYGVQKNVTSTGVSTTTVVPSSPTSDEAKEYTFMLL
EKENAPVKKETERLVMAKDTGKQFSSAATAVAYSEDSLKKEKKKVSSFVETATARTTETN
AGSLMKVSTKDKATYPEMRKDESGGGLGFWSCCSWWKWLLGLLLGLLLLLGLLLGLIALA
EEVRRLKARVDALEQASSSSSAHSSRLSSSSAINIIDPLGSAYIDKTSSTSSTTLLRSDN
GINLGVAAGAGPGSANGRGQDSVALQRAVQQIVRTELQSDTVRATLAHSMKGARGEPGTK
GDQGAPGVKGDNGFPGLPGPPGQMGHSGLEGPRGPKGNAGEAGAEGPPGQRGREGPTGSR
GEPGPPGFGEKGDKGSPGEPGGPGPAGTAGPVGPKGSVGGQGATGIPGTPGPQGFRGEGG
APGPKGEKGPAGPPGNKGEPGEKGSRGTSGDPGQKGLPGPDGTKGSKGPAGAPGADGEKG
SRGDKGSDGLPGPRGPAGPPGDAGLPGIPGLQGPPGIPGNPGQPGGKGEAGEPGRIINAA
GSSSVAIPGPPGIPGHSGVAGSPGLSGPVGPAGRPGTPGPRGEKGEEGEKGDQGRPGITV
QTVETTERRAPVASLPGPPGPPGPPGEPGAQGLLGKGPPGPEGPQGEPGVPGVGVPGPRG
DKGEPGSFVPNSGTFFAGPPGPAGPTGLPGSPGPQGYQGDPGQPGLPGVPGDPGVGFPGS
QGQTGGPGPEGDSGLPGPQGPEGPEGQPGPKGEAGVPGAPGIPGYSSGGSSRSSPVAPGP
PGPPGAPGRDGPPGSGTPDVRQYITEYLKSDGVREYMSGPPGPPGVPGPPGGGSVESVDD
LASRVIAYIQSGGIASGVPGPPGPPGAPCGGSTSLNDIISLLQSEEVRRYVIGPPGPAGP
PGIPGIPWRGGYGFNTHEVAGRVLNLMNEQGMVGMLGPHRSPGPPGQPGSYSDISYLLQN
AEYSGVLGAQGPPGPPGVPGPAGPQGPAGPSGQAPYSSSGYRLEEVKDYIQSDGIRGGMF
GLPGPPGPPGSQGHKGEQGSSGYGHAFDHRTSEGRRLAETETDYSNIAVRVTDYIKYHGL
LRDVVENRSQLEKSQVVQGPPGPPGPPGAPGFSRVFGSHSNATDLVEYIRAHGNIVGPPG
RPGQKGDIGHTGHKGERGLDGIPGRTGLPGLEWKRGRKENTHS
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgctctttagtacaggtgcagatgtcaataataatgtcattaagaatatcattaggaag
ttgaagtatgacttcagttatgacacgaagaaggaaaagtcgtcaatagtggtgtttttc
tttctggaatacacaaggagaggatatgctgcagcaagtgcagttgccagtaaacccacc
agagggcggagccacagcagagagagtgagatcagatgcagactgcagagtgcctctccc
acagccaaaagatggacggagctggaagacgtgaagcggctgctgaaggggggttgctcc
agcagcatcagcccccctcgctcccccaccagcaccctccctatccccaggaaggcccgc
gtagagaccagaaccatgccaaacagctcccagtcaggccagtacgacagcaccaccctg
gacttaagaatgccttcctacatgtggtcaggccccacggctggaggctatggttaccac
agcaacgccatcaacctgtcccccacctccaccctccaacactcacctatcacactcaca
gccacagggcttcagaacaacctggccctcagctctacatccatgaactctggactctct
gcctctagcactgtctatggtgtgcagaaaaatgtcacaagcacaggggtgtccacaacc
acagtggtgcccagcagtcccaccagtgacgaggccaaagaatacacattcatgctgctg
gagaaagagaacgctcccgtcaaaaaggagacggagagactcgtcatggccaaagatacc
ggcaagcagttctcctctgctgccactgctgttgcctattctgaggactcactgaagaag
gagaagaagaaggtgtccagctttgtggagacagctacagccagaaccacagaaactaac
gctggatccttgatgaaagtgtcaacgaaagacaaagcaacctatccagagatgcgtaag
gacgagtctggaggaggtctgggcttctggtcctgctgctcctggtggaagtggctgctg
ggcctcctgctgggtcttctgctcctcctggggctcctcctgggactcatcgccctggcc
gaagaagtcagacgtcttaaagctcgtgtggatgccttggaacaagcctccagctcttcc
tcagcccattccagtcgcctctcctcctcctctgccatcaacatcatagaccctctggga
tctgcgtacatagacaagacctcctctacctcctctaccacactgctccgctctgataat
ggtatcaatctgggagtggcagcaggagcaggtccaggatcagctaatggacgaggccaa
gactctgtagctctgcaaagggcagtacagcagatagtcaggactgagctgcagtccgat
actgtacgagcaacacttgcacactcaatgaaaggagcgagaggagagcctgggaccaaa
ggtgaccaaggtgctccaggagtcaaaggtgataacggattccctggcctaccaggtcct
ccaggtcagatgggccacagtggactggagggcccgaggggacctaaaggaaatgcaggt
gaagctggtgcagagggccccccaggccagaggggccgagaaggaccaacgggatcacgt
ggagagcctggtcctccagggtttggagagaaaggggacaaaggttctcctggtgaaccc
ggaggccccggacctgctggcactgctgggcctgttgggcctaaagggtcagtgggtggt
cagggtgctacaggtatcccaggaactcctggcccacagggtttcagaggtgaaggaggc
gctccaggaccgaaaggagagaagggaccagctggaccgccaggaaataagggcgagcca
ggagagaaaggatcccgcgggacatcaggtgacccaggtcaaaaaggacttccaggacca
gacggaacaaagggatccaaaggacccgcaggtgctcccggggctgacggtgaaaaaggc
tctagaggtgacaagggatcggatggattaccaggtccaagaggaccagcaggacctcca
ggagatgcaggcctcccaggcattcccgggcttcaaggtccgccaggtataccaggtaat
ccaggtcagcctggaggtaaaggtgaagctggagaacctggtagaatcatcaatgcagct
ggttccagttcggttgccatccccggacctccaggcatccctggacactctggtgttgcc
ggatcccctggactctcaggtcctgtaggccctgctggtcgtcctgggacgcctggtccc
aggggagaaaagggagaggaaggagagaagggagatcagggaaggcctggtattactgta
cagactgtggaaaccacagagagacgtgcacctgtggctagtcttcctggcccacctggc
cctccagggcccccaggagaaccaggtgcccagggtcttctaggtaagggtcccccaggt
cctgaaggtcctcaaggagagccaggtgtaccaggtgttggtgtacctggcccccgagga
gataagggagagccaggtagcttcgtgcccaactcaggaaccttcttcgctgggccccca
ggacctgctggtccaactggccttccaggatcaccaggtccccagggttaccaaggtgac
ccaggtcagcccggtttaccaggagttcccggagatcccggtgtcggtttccctggatcc
cagggacaaactgggggtccaggaccagaaggggacagtggacttccaggtccccaaggt
ccagagggccccgaggggcaaccgggtccaaaaggtgaggctggcgttccaggtgctcca
ggaatccctggctactccagtggtggatcatccaggagttcccctgtagcgccaggtcca
ccaggacctcccggggctcccggccgtgatgggccacctgggtctggaacaccggacgtc
cgccaatacatcacagaatacctcaagagcgatggtgtcagggagtacatgtcgggacct
ccgggtcctccgggtgtaccggggccccctggcggtggatcagtggagtccgtggacgac
cttgctagtcgcgtcatcgcatacatccagagtggaggtattgctagtggggtgcctggc
cctccaggcccgcctggcgctccctgtggaggcagtacatcgctaaatgacatcatcagc
cttctacagagtgaggaagtgcgacgctacgtcattggtcctcctggccctgctggacct
cctggcatcccagggatcccatggagaggaggctatggctttaatacccatgaggtggct
ggacgagtcctcaatctaatgaatgagcagggtatggtgggcatgctcggaccccataga
tctcccggcccaccaggccaacctgggtcctacagtgacatctcttatcttctgcaaaat
gctgaatacagtggcgtcttgggcgctcaggggcctcctggtccacctggtgtcccaggc
cctgctggccctcaaggccctgccggtccttcaggacaggccccctacagcagctctgga
tacaggctggaggaggtcaaggactacatacagagtgatggtataagagggggcatgttt
gggcttccaggccccccaggtccccctggatcccagggacacaagggagagcagggtagc
tctgggtacggccacgccttcgaccacaggaccagcgagggaagaaggttggctgagact
gagacagactactccaatatagcggtccgagtgactgactacatcaagtaccatggtctg
ttgagggacgtggttgagaaccggtctcagctggagaagtcacaggttgttcaaggaccc
ccaggaccccctggccctcccggtgcgccaggattcagccgtgtttttggatcccatagt
aacgccactgaccttgtggaatacatcagagcccatggaaacattgtgggaccccctgga
aggccaggacagaaaggggacataggacatacaggtcacaaaggcgagagaggactagat
ggaatcccaggaaggacaggcctccctggtctggagtggaaaagggggagaaaggagaac
acacactcgtga
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