Oncorhynchus masou masou (cherry salmon): 135522225
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Entry
135522225 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
135522225
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
135522225
PBAF complex
135522225
GBAF(ncBAF) complex
135522225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135522225
NCBI-ProteinID:
XP_064804362
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Position
30:18319881..18339381
Genome browser
AA seq
1097 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPMGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVHDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPISEKHWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNPKKDSENTPVKGGAVADLDDLEDDSVVSGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPXPHFNVLADTPSGLTPMHHRPPQIPSSQQMINFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTXPEEPEKTEPTETEKVDT
DSDSQQPDKAESKDEAEKPSESAEKLAEGHKVKSETAELSEREEGESEGGEGKATADKDK
EEAMETSEEDKEKAEQGAMEEEEEERKKREPDGGEGNIATAAAAALASAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLK
YAEMKARQQMEQQQASTVAQGPAPHHGPPGPGMHHGPSHHGPPPAMHSGHGPPGPGFHPM
GPHHPQQTGPMGGPGQLMPGRMMPGGPPTGSMPPMMGPRHPGAPNGMYPGPSPVQADGMP
PASVGPQAAAPARVADS
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggaccagcagccggccct
atgggcgtcggtactgcggtgggccgtaaaaaggatggaggtccttcctcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtccaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcggacggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcagggggtgctctgtgtcacatcctgggc
tctacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggataggaatgtagagatgtttttgaatgtagagaaaaccctggttcagaataac
tgcctgactcgaccaactgtattcctggtgcatgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcactgaggacaagtctaaggccacc
catcatatctacccctctccaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagcgacgtggaaggggatgtggaggacccacccatctctgagaagcactgg
aaggtgcatgccaagtgggtcctggacacagacgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccttctcccccgaccaccccagccgagtctcgcaagaagggtggc
aagaaggggaatcctgggtctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaaccctaagaaagatagcgagaacaccccagtgaagggc
ggggcagtggctgacttggatgatctggaggatgactctgtggtctccggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccatgagatcgagaggcgtgcactgccagagttcttcaacggcaagaacaagtccaag
tccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaaccct
caggagtacctgacctccacctcctgccgcaggaacctaaccggagacgtgtgtgccgtc
atgagggtgcatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccggcccctccccatgggccccccgcccnacccccacttcaacgtgctggctgacacc
ccctctggtctgacgccgatgcaccaccgtcccccacagatcccctccagccagcagatg
atcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctgcgt
aacgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagaactctgagtcgtccctgggccccctggcctac
cagcccgtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tccgtggtggatccccgtgtggcctctgccgccgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcaggag
gcggcccgcagcacaggcaaggtagaccctgcctatggcctggagagcagcggcatcgca
ggaactntccccgaggagcccgagaagaccgagccaacagagaccgagaaggtggacaca
gactccgactcccagcagcctgacaaggctgagtctaaggacgaggcggagaagcccagt
gagtctgctgagaagctggccgagggacacaaggtgaagagcgagacggccgaactgtct
gaacgggaggagggagagagtgagggaggagagggcaaggccacagcagacaaagacaag
gaggaggccatggagacctcagaggaggacaaagagaaggcggagcagggagcgatggaa
gaggaggaagaggagaggaagaagcgagagccggacgggggggaggggaacattgccact
gcagccgctgctgccctcgcctcagctgccaccaaggccaagcacctggcggcggtggag
gagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggaa
atcaagctcagacactttgaggagctagagaccatcatggaccgagagaaagaggctttg
gagttgcagaggcagcagctgctgacggagcgccaggccttccacatggagcagctgaag
tatgctgagatgaaggctcgccagcagatggagcagcagcaggccagcacagtggcccag
ggccccgcaccccaccatggtcccccagggccaggcatgcaccacggaccctcccaccat
ggaccccctcccgccatgcactccggacacggccctcccggacccgggttccaccccatg
ggtccccaccacccgcaacagaccggcccaatgggagggcccggtcaactcatgccagga
cgcatgatgcctggcggtccccccactggcagcatgcctcctatgatgggtccccgccac
cctggagcccccaacggcatgtaccctggcccttcgcctgtacaggctgatggtatgccc
ccagcatctgtgggacctcaagcggcagccccagcacgagttgctgacagctaa
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