Oncorhynchus masou masou (cherry salmon): 135522696
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Entry
135522696 CDS
T10723
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135522696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135522696
03009 Ribosome biogenesis [BR:
omm03009
]
135522696
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135522696
Spliceosome [BR:
omm03041
]
Complex A
U1 snRNP components
U1 related factors
135522696
Complex B
135522696
Ribosome biogenesis [BR:
omm03009
]
Eukaryotic type
Pre-60S particles
Helicases
135522696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135522696
NCBI-ProteinID:
XP_064805282
LinkDB
All DBs
Position
4:8254086..8260507
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AA seq
491 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKEVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGKRWL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcccggattttccgacagagatcgtggcagagacagggggtatggaggtgcacctcgt
tttggaggtgggggtggtggcagtaggggtggacccccacaggggaaatttggcaaccca
ggtgaaagactgcgtaagaaacactggaacatggatgagctcccaaagtttgagaagaac
ttctaccaggagcacccggatgtgacccgcagaccacctcaagaggtggagaactacctg
agaagtaaagaagtaacagtgaaaggcagagactgccctaagccaatgatgaagtttcat
gaggccaattttccaaattatgtgatggatgtgattgccaaacagggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctctggtaaaacccttgcttatcttctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggcccagcaggtgcagcaggttgccgctgagtacggcagggcctcccgtctgaag
tcagtctgcgtctatggtggagcgcccaaaggaccccagattcgggaccttgagcgaggt
gttgagatctgtattgccaccccagggcgtctcattgacttcctggaggctgggaagacc
aaccttcgcaggtgtacctaccttgtgctggacgaggctgaccgtatgctggacatgggc
ttcgaaccccaaatccgcaaaattgtggaccaaattagaccggatcgtcagacactcatg
tggagtgccacctggcccaaggaggtgcgtcagctggctgaggacttcctaaagcagtat
gtccagatcaacgtgggtgctctgcagctcagcgccaatcacaacatcctgcagatagtg
gacgtgtgcaacgacggagagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagaccatcatatttaccgagaccaagagacgctgcgatgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatccttattgcc
accgacgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acgggcactgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggcgatcaaccccaagcttctccagatggcggaggcc
agaggaggtcgtggaggggggaagaggtggctttag
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