Oncorhynchus masou masou (cherry salmon): 135523666
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Entry
135523666 CDS
T10723
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135523666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135523666
03036 Chromosome and associated proteins [BR:
omm03036
]
135523666
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
135523666
Coactivators
SAGA/TFTC/STAGA complex
135523666
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
135523666
STAGA complex
135523666
TFTC complex
135523666
SAGA complex
135523666
SLIK complex
135523666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
Beta-prop_WDR75_2nd
PROPPIN
WD_LRWD1
Beta-prop_ELP1_1st
Nbas_N
Motif
Other DBs
NCBI-GeneID:
135523666
NCBI-ProteinID:
XP_064806559
LinkDB
All DBs
Position
4:10373190..10377130
Genome browser
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQAESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVNGNPKILAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGTTGAGAAGAATTAPNSTSSWSGAVGPERGE
AAGVEVPTGIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFSSG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccctaaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcaggcagagtcggggtgtgcaaacattgtctctgctgcc
ccttgtcaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaagcggcgttgccatggggccaggaggtgagctgcgtcctgtacccactcttcgtt
tatctccacttggacatggtgcgctgcagcttgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
cacgtcctcacccagcaggatgtcaacggcaaccctaagatcctggcctttctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctatctgcagagt
gaagacaacagtaccctctgtagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtacgggacgacgggagcgggagccgccggggccgcc
accacggcccccaactctacctcctcgtggtcgggagcggttggccctgagcgaggggag
gcggcgggggtggaggtccccacagggatcccgcagagcgaggtggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccaccatcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtctgccgacagcaagctg
ctggccgccgggttcgacagttcggccgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtgtcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgaaatcaagaccctgcgtggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctacttttccagcggc
tcccacgaccgcactgcccgcctctggaccttctccaggacataccccctgaggctctac
gccggccacctagcagacgtggactgtgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagctttcgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggcgctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgacccacgcggatggctcgtccagcgagctggtgggtctctacacgggaaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaacg
gcgcaagaaaaacatggacagtag
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