Oncorhynchus masou masou (cherry salmon): 135523688
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Entry
135523688 CDS
T10723
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03420
Nucleotide excision repair
omm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
135523688 (ercc4)
03460 Fanconi anemia pathway
135523688 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
omm03032
]
135523688 (ercc4)
03400 DNA repair and recombination proteins [BR:
omm03400
]
135523688 (ercc4)
DNA replication proteins [BR:
omm03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
135523688 (ercc4)
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
135523688 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
AmiA-like
Motif
Other DBs
NCBI-GeneID:
135523688
NCBI-ProteinID:
XP_064806591
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Position
31:complement(26314273..26321152)
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AA seq
896 aa
AA seq
DB search
MAGQLLEFETEMFLSLFGSDGLLVTAEGMGIDRILLQFMRVYSEEGSLVLLLNTTTPEQE
FFTEQLRAEGVSHLPRTVTSDVQSTERYEVYTQGGVLFVTSRILVVDFLTDRIPAHLISG
ILVYRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKATSFSSGFCQVERVMRNLFVKKL
FLWPRFQASVNSVLDRHKPEVVELHVSLTPAMRAIQSSVLDIMNACLKELKRYNPTLEAE
DLSLENTLGNAFEKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLLYLTQYDCVTFLNLL
ESLRSSQKNFGSNSGWLFLDSSTSMFINARSRVYCIPESKKKLKVGADTEKQQSTSEVKR
VLVLEQNPKWEALTEVLQEIEKENKSSELKPGHILICASDDRTCAQLHEYISRGSDSLLN
RLYARTIGKRDALFNPDAHKQQGQSWARKQQPEKETKGKKAKGKAATKPNSKSKKRPSLT
LTQMVGNREGDEGEVMGSSGDEEGLLEKEEEEELKLDLSSDAYYGVLKEPLTVIHPLRGC
TDPYSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKASRPGKPLRVYFLIYGGSTEEQRYL
TGLAKEKQAFEHLIREKATMVVPEEREGREDTNLDLSRSQEPAYSTTNTRKAGGQEQPKE
PSRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTADTCVERKSVSDLIGSLQSGR
LYTQCLSMTRYYRKPVLLIEFDSAKPFSLVARTDFRQEISANDVTSKLTLLTLHFPRLRI
LWCPSPHATAELFQELKKGRPEPDAAAAQAITAESDTVAESADLFNPGPYDFLLRMPGVN
AKNYRALVKHADSLAHLAKLSQERLAQILGHAGNGKSLYEFLHNTVDIPAPAQKCK
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggctggtcaactacttgaatttgagacggagatgttcctgagtttgtttggctcggac
gggctgctggtgactgcggagggcatggggatagaccgcatcctgctgcagttcatgcgg
gtgtactccgaggaagggagtctggtgctgctgctgaacactaccacgcccgagcaggag
ttcttcacagagcagctgcgagctgagggagtgagccacctgccccggacagtgaccagt
gatgttcagagtacagagcgctacgaagtttatacacagggaggggtcctgtttgtcacc
agccgtatcctagtggtggacttcctcactgacaggatacctgcacacctcatctctggt
atactggtgtaccgggctcataagataattgagtcttgccaggaagccttcatcttgaga
ctgttcagacagaagaataagacaggcttcatcaaggccttcacagacaaggccacatcc
ttctcctcaggcttctgtcaggtggagagagtcatgaggaacctctttgtcaagaaactt
ttcctctggcccaggttccaggcgtcagtgaactcggttttggacagacacaagccagag
gtggtggagttgcatgtgtctctgaccccggccatgagggccatccagagctctgtcctg
gacatcatgaatgcctgtctgaaggagctgaagcgctacaaccccacgctggaggcagag
gacctctccctggagaatacccttgggaatgccttcgaaaagactatccgtcactatctg
gaccctctgtggcaccagctgggagccaagaccaagtctttggtccaggacctgaagatc
ttacgtaccctgctgctctacctcacccagtacgactgtgtcaccttcctcaacctcctc
gagtcactccgctccagccagaaaaactttggaagcaactctgggtggttgttcctggac
tccagcacctccatgtttattaacgccaggagtcgggtgtactgcattcctgagtccaag
aagaaactcaaggtgggagctgacacagaaaaacaacaaagcacttcagaggtgaagagg
gtgctggtgctggagcagaacccaaagtgggaggctctgacagaggtgctgcaggagata
gagaaggagaacaagagctctgaactcaaaccaggccacatcttgatctgtgccagtgat
gacagaacctgtgctcaacttcatgagtacatcagtcgtggctcagactccctactcaat
agactctacgctcgcaccattggcaaaagagatgccctgttcaacccagacgcacacaaa
caacagggccagagttgggccaggaaacaacagcctgagaaagagaccaaaggaaaaaaa
gccaaagggaaggcggcaaccaagccaaactcaaagagtaaaaagaggccgtctctgacc
ctgactcaaatggttggcaacagagagggggatgagggagaagtgatgggcagcagtggg
gatgaggaaggcctgttggaaaaagaggaggaggaggagctaaagttagacttgtcgtct
gacgcctactacggtgttctgaaagagccattgactgttatccaccctctgaggggttgc
actgacccctacagtctgacgcgggtactgcacgaggtggagcccagttttgtggtgctt
tatgacgccgagctcagctttgttcgtcagctggagatttacaaagcctccagaccgggg
aaaccactgagggtgtacttcctgatctatggtggctccactgaggagcagaggtacctg
actggtctggctaaagagaaacaagcctttgaacacctcatcagggagaaggccactatg
gtggttcctgaggagagagagggaagagaagacaccaacctggatctgagcaggagtcag
gagcctgcttactctactaccaacacacgcaaagcggggggccaggagcagcccaaggag
ccgtcccgtgtgattgtggacatgcgtgagttccgcagtgagctcccttccctcctccac
cgacgcggcctggacatcgagcctgtcaccctggaggtgggcgattacatcctcactgcc
gacacctgcgtggagcgcaagagcgtcagtgacctgattggctcgcttcagagcggacgc
ctctacacccagtgcctgtccatgacgcggtactaccggaagcccgtcctgctgatcgag
ttcgactcggccaagcccttttccctggtggcccgcaccgacttccgccaggagatctca
gctaacgacgtcacctccaagctgaccctcctcaccctgcacttcccccgcctcaggatc
ctctggtgcccctccccacacgccaccgcagaacttttccaggagctgaagaaaggtcga
cccgagccggatgccgccgcggcccaggccatcactgccgagtcggacacggtggcagag
tcagctgacctcttcaaccctgggccatacgacttcctgcttcggatgccaggggttaat
gcgaagaactacagggctctggttaaacacgcagatagcctggcacacctagccaaacta
agccaggaaaggctagcacagattctggggcatgctggcaatgggaagtcgctctatgag
ttcctgcataatactgtggacatccctgcccctgcacagaaatgtaaatag
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